POPDC3 (popeye domain containing 3)

Gene: POPDC3 (popeye domain containing 3) Chlorocebus sabaeus

Analyze

Symbol:

POPDC3

Name:

popeye domain containing 3

RGD ID:

18665404

Description:

ENCODES a protein that exhibits cAMP binding (inferred); INVOLVED IN regulation of membrane potential (ortholog); ASSOCIATED WITH Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 26 (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); sarcolemma (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

popeye domain-containing protein 3

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	68,630,236 - 68,652,699 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	68,648,685 - 68,652,710 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	40,977,802 - 41,000,331 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Autosomal Recessive Limb-Girdle Muscular Dystrophy Type 26 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heart development (IEA)

regulation of membrane potential (IEA,ISO)

skeletal muscle tissue development (IEA)

striated muscle cell differentiation (IEA)

Cellular Component

membrane (IEA)

sarcolemma (IEA)

Molecular Function

cAMP binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

POPDC3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	68,630,236 - 68,652,699 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	68,648,685 - 68,652,710 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	40,977,802 - 41,000,331 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

POPDC3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	105,157,900 - 105,180,014 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	105,157,900 - 105,180,014 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	105,605,775 - 105,627,889 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	105,712,470 - 105,734,563 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	105,712,469 - 105,734,563	NCBI
Celera	6	106,227,913 - 106,249,989 (-)	NCBI		Celera
Cytogenetic Map	6	q21	NCBI
HuRef	6	103,048,673 - 103,070,745 (-)	NCBI		HuRef
CHM1_1	6	105,867,475 - 105,889,561 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	106,333,653 - 106,355,749 (-)	NCBI		T2T-CHM13v2.0

Popdc3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	45,165,401 - 45,194,546 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	45,054,194 - 45,194,548 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	45,289,305 - 45,318,450 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	45,178,098 - 45,318,452 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	45,009,111 - 45,038,256 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	44,977,720 - 45,006,865 (+)	NCBI		MGSCv36	mm8
Celera	10	46,163,076 - 46,192,460 (+)	NCBI		Celera
Cytogenetic Map	10	B2	NCBI
cM Map	10	23.35	NCBI

Popdc3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	50,354,775 - 50,383,050 (+)	NCBI		GRCr8
mRatBN7.2	20	48,772,397 - 48,800,677 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	48,772,462 - 48,800,593 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	50,515,094 - 50,543,186 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	50,164,847 - 50,192,937 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	50,849,177 - 50,877,267 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	50,394,617 - 50,422,551 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	50,394,650 - 50,422,560 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	52,006,146 - 52,033,991 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	20	51,221,107 - 51,249,040 (-)	NCBI		Celera
Cytogenetic Map	20	q13	NCBI

Popdc3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	30,564,194 - 30,571,767 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	30,566,988 - 30,573,158 (-)	NCBI	ChiLan1.0	ChiLan1.0

POPDC3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	125,177,888 - 125,199,634 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	123,064,377 - 123,086,092 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	102,972,263 - 102,993,986 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	106,846,321 - 106,864,675 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	106,846,329 - 106,850,599 (-)	Ensembl	panpan1.1		panPan2

POPDC3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	62,597,020 - 62,615,062 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	62,484,472 - 62,601,339 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	62,385,191 - 62,403,247 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	63,447,955 - 63,466,023 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	63,447,955 - 63,466,028 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	62,802,847 - 62,820,916 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	62,644,090 - 62,662,157 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	62,923,296 - 62,941,390 (-)	NCBI		UU_Cfam_GSD_1.0

Popdc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	97,565,101 - 97,586,052 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936564	1,840,458 - 1,843,492 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936564	1,840,270 - 1,860,894 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POPDC3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	71,380,770 - 71,400,191 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	71,380,760 - 71,400,134 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	80,701,627 - 80,720,992 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Popdc3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624952	381,134 - 385,794 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624952	381,543 - 403,907 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	17		17
Low	4	10	37
Below cutoff	13	7	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008007470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038001070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005241322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005241323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000012812 ⟹ ENSCSAP00000010835

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	13	68,648,685 - 68,652,710 (+)	Ensembl

RefSeq Acc Id:

XM_008007470 ⟹ XP_008005661

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	13	68,630,236 - 68,652,699 (+)	NCBI
Vero_WHO_p1.0	NW_023666040	40,977,802 - 41,000,331 (+)	NCBI

Sequence:

show sequence

TGCGCCCGGCGCCGCGGGGTGGGCGGCGAGGCATTCGCGAAGCGGGTGCTGAGGGCGTCCGCGC
GGGCCACCCGCGTCCAGCGCGCTCCGCCGGTAAACTTCTGCGGGCGCCGGGCTGGAGCTCCACG
CAGGAACGGGAGGGAAAGGAAATAGCAAAATATTTGTGGACTGGATCCAAATCAGGAGCCCAGA
TGAACTTAAAGAAGCGAGCCTGGGATTCTTAGTTTTTCAAGATCCATACACACGAAGCCTTTAA
TCAGCACCAACTCCAGTGTCCAAGTTTTCTCTGGTTTTGTGAAGACTGAGCAAAACTCTCATGA
TGGAAAGAAAACCAAAGGACTTAGTTACCTGTTTCAGTGTCATCTAAAGTCAACTGAAAAGTGA
AGCAGGCAGTAATATAGCCATGGAAAGAAATTCAACTTTATGGAAGAACCTAATAGATGAACAC
CCAGTCTGCACAACCTGGAAACAAGAGGCCGAAGGAGCCATTTATCATCTTGCCAGTATTTTGT
TTGTAGTAGGTTTCATGGGTGGCAGTGGATTCTTCGGGCTCCTTTATGTCTTCAGTTTGCTGGG
GTTGGGTTTTCTCTGTTCTGCTGTCTGGGCTTGGGTAGATGTCTGTGCAGCTGACATATTTTCC
TGGAATTTTGTACTGTTTGTCATCTGCTTCATGCAATTTGTTCATATTGCATATCAAGTTCGCA
GCATAACCTTTGCCCGAGAATTCCAAGTGCTGTACAGCTCCCTTTTCCAGCCCCTGGGGATCTC
TTTGCCTGTCTTCAGAACGATTGCTTTGAGCTCTGAAGTGGTTACTTTGGAAAAGGAACACTGT
TATGCCATGCAGGGGAAAACTTCCATTGATAAACTCTCCTTGCTTGTTTCAGGAAGGATCAGAG
TGACAGTTGATGGCGAATTTCTGCATTACATTTTCCCCCTTCAGTTCCTGGATTCTCCTGAGTG
GGATTCACTGAGACCCACAGAGGAAGGCATTTTTCAGGTAACCCTCACTGCAGAAACTGATTGT
CGATATGTGTCTTGGAGGAGAAAGAAATTGTATCTGCTCTTTGCTCAGCATCGTTATATCTCCC
GCTTGTTTTCAGTGCTAATTGGCAGTGACATTGCAGATAAACTCTATGCCCTGAATGACAGGGT
ATATATAGGAAAAAGATATCACTATGATATTCGGCTACCCAACTTCTATCAAATGTCAAGTCCA
GAAATACGCAGATCACCCCTGACACAACATTTTCGGAATTCCAGACGATACTGTGATAAATGAC
ATCAAAGTCTGAAATTTATAAGTATAAAAAGAGACTCTCTCTTCATCATTCCCCAAATGAAATA
GGAAAATACAAAAAAAAGAGCTCCCTAATATTTTTATAAATCAAATTCAGAAGTCAGATACCAT
TGCTAACTGTTTTATTCCTTTCAGCAACTGCATTGTAAATAAATTTTACAAATTTTTCTTGTAT
TTCTTATTGTTATAATTGAGGAGGGGGTGGATAACTATGGGCAGTTTGCCCTTTTCTGCATCAA
AACTGGGAGAATGAAATTCCACATTCTCAATTCTTTTCTCACATTTACTCAAATGCATTGTCTT
GCCCTATAGACTCAGCGGTTGCTTCTCAAGAAGCAGCCAGCAAGTATTCTCAGCCTGAGGGTGG
GTTGCTACTGTCCACATAAGCATTTCCAGAATTCACTTTTTTGCTACAACCTCCAGTGAAAGCA
AGATGTATTACTGTGGTGGGCAGCAATTATTTATTTTAAATGTGCAGTTACTTGATATGACTAA
AAAGCAGAATAAATGCAAGAGATAATATGTGAATCTTGAAGCCTATTTTTATTGCTACAAAATA
AAATAACATTTAAAAAGAA

hide sequence

RefSeq Acc Id:

XM_038001070 ⟹ XP_037856998

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	40,977,802 - 41,000,331 (+)	NCBI

RefSeq Acc Id:

XR_005241322

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	40,977,802 - 41,000,331 (+)	NCBI

RefSeq Acc Id:

XR_005241323

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666040	40,977,802 - 41,000,331 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008005661	(Get FASTA)	NCBI Sequence Viewer
	XP_037856998	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000010835
	ENSCSAP00000010835.1

RefSeq Acc Id:	XP_008005661 ⟸ XM_008007470
- UniProtKB:	A0A0D9RQE6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000010835 ⟸ ENSCSAT00000012812

RefSeq Acc Id:	XP_037856998 ⟸ XM_038001070
- UniProtKB:	A0A0D9RQE6 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000014725	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000012812.1	UniProtKB/TrEMBL
InterPro	cNMP-bd-like	UniProtKB/TrEMBL
	Popeye_prot	UniProtKB/TrEMBL
KEGG Report	csab:103240657	UniProtKB/TrEMBL
NCBI Gene	POPDC3	ENTREZGENE
PANTHER	POPEYE DOMAIN-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
	PTHR12101	UniProtKB/TrEMBL
Pfam	Popeye	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51206	UniProtKB/TrEMBL
UniProt	A0A0D9RQE6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM