ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3) - Rat Genome Database

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Gene: ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3) Chlorocebus sabaeus
Analyze
Symbol: ST6GALNAC3
Name: ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
RGD ID: 18664852
Description: ENCODES a protein that exhibits sialyltransferase activity (ortholog); INVOLVED IN glycoprotein metabolic process (ortholog); glycosphingolipid metabolic process (ortholog); glycosylceramide metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); medium chain acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12056,415,330 - 57,085,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603360,430,142 - 60,992,129 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ST6GALNAC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12056,415,330 - 57,085,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603360,430,142 - 60,992,129 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ST6GALNAC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,074,746 - 76,637,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,074,746 - 76,634,603 (+)EnsemblGRCh38hg38GRCh38
GRCh37176,540,431 - 77,103,024 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,312,992 - 76,869,220 (+)NCBINCBI36Build 36hg18NCBI36
Build 34176,252,424 - 76,808,653NCBI
Celera174,780,500 - 75,336,477 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef174,670,490 - 75,226,897 (+)NCBIHuRef
CHM1_1176,656,258 - 77,212,341 (+)NCBICHM1_1
T2T-CHM13v2.0175,912,700 - 76,475,062 (+)NCBIT2T-CHM13v2.0
St6galnac3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393152,903,911 - 153,430,804 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3152,903,903 - 153,430,811 (-)EnsemblGRCm39 Ensembl
GRCm383153,198,274 - 153,725,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3153,198,266 - 153,725,174 (-)EnsemblGRCm38mm10GRCm38
MGSCv373152,865,473 - 153,388,097 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363153,139,895 - 153,662,519 (-)NCBIMGSCv36mm8
Celera3159,658,440 - 160,186,623 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.82NCBI
St6galnac3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82244,789,627 - 245,304,975 (-)NCBIGRCr8
mRatBN7.22242,129,755 - 242,645,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,129,763 - 242,645,133 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2249,942,272 - 250,461,906 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02247,829,012 - 248,348,657 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02242,739,510 - 243,254,284 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02259,379,653 - 259,918,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2259,379,509 - 259,898,525 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02278,043,763 - 278,583,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42251,284,792 - 251,701,550 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12251,520,005 - 251,716,157 (-)NCBI
Celera2234,066,071 - 234,594,925 (-)NCBICelera
Cytogenetic Map2q45NCBI
St6galnac3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542316,406,780 - 16,916,121 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542316,405,309 - 16,916,163 (-)NCBIChiLan1.0ChiLan1.0
ST6GALNAC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21150,259,224 - 150,817,911 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,419,732 - 149,978,473 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,290,496 - 75,851,683 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,377,327 - 77,936,011 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,377,482 - 77,930,220 (+)Ensemblpanpan1.1panPan2
ST6GALNAC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1670,060,406 - 70,583,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl670,062,555 - 70,574,865 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha672,717,608 - 73,247,248 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0670,647,955 - 71,172,477 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl670,647,963 - 71,163,211 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1670,150,216 - 70,673,954 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0670,096,617 - 70,619,495 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0670,584,540 - 71,108,132 (-)NCBIUU_Cfam_GSD_1.0
St6galnac3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505887,553,791 - 88,062,703 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365713,064,179 - 3,574,202 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365713,064,150 - 3,572,992 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST6GALNAC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6136,633,441 - 137,201,252 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16136,633,410 - 137,201,213 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26127,002,391 - 127,117,890 (+)NCBISscrofa10.2Sscrofa10.2susScr3
St6galnac3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474220,407,410 - 20,928,766 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474220,405,342 - 20,928,792 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_007978248   ⟹   XP_007976439
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12056,529,693 - 57,085,966 (-)NCBI
Vero_WHO_p1.0NW_02366603360,430,142 - 60,992,129 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007976439 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007976439   ⟸   XM_007978248


Additional Information

Database Acc Id Source(s)
NCBI Gene ST6GALNAC3 ENTREZGENE