RCOR1 (REST corepressor 1) - Rat Genome Database

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Gene: RCOR1 (REST corepressor 1) Chlorocebus sabaeus
Analyze
Symbol: RCOR1
Name: REST corepressor 1
RGD ID: 18663718
Description: ENCODES a protein that exhibits chromatin binding (ortholog); enzyme binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); Colonic Neoplasms (ortholog); genetic disease (ortholog); FOUND IN DNA repair complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,537,618 - 80,668,909 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605367,729,436 - 67,862,816 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
RCOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,537,618 - 80,668,909 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605367,729,436 - 67,862,816 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RCOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814102,592,649 - 102,730,561 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14102,592,649 - 102,730,561 (+)EnsemblGRCh38hg38GRCh38
GRCh3714103,058,986 - 103,196,898 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,128,986 - 102,266,666 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414102,128,985 - 102,262,596NCBI
Celera1483,113,452 - 83,251,043 (+)NCBICelera
Cytogenetic Map14q32.31-q32.32NCBI
HuRef1483,235,824 - 83,373,621 (+)NCBIHuRef
CHM1_114102,996,742 - 103,134,551 (+)NCBICHM1_1
T2T-CHM13v2.01496,828,874 - 96,966,907 (+)NCBIT2T-CHM13v2.0
Rcor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,005,801 - 111,082,336 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,005,785 - 111,082,335 (+)EnsemblGRCm39 Ensembl
GRCm3812111,039,367 - 111,115,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,039,351 - 111,115,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712112,278,009 - 112,351,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,487,606 - 111,561,197 (+)NCBIMGSCv36mm8
Celera12112,235,091 - 112,307,888 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.93NCBI
Rcor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,890,851 - 135,967,367 (+)NCBIGRCr8
mRatBN7.26130,069,606 - 130,146,164 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,069,392 - 130,146,153 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6130,246,376 - 130,324,659 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,542,367 - 130,620,651 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06129,907,204 - 129,982,978 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,475,470 - 135,552,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,513,650 - 135,548,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,549,137 - 135,552,144 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,865,122 - 144,938,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,859,305 - 135,862,320 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6127,637,603 - 127,713,328 (+)NCBICelera
Cytogenetic Map6q32NCBI
Rcor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555381,774,910 - 1,880,545 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555381,774,910 - 1,880,550 (+)NCBIChiLan1.0ChiLan1.0
RCOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215103,742,618 - 103,879,516 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114102,959,127 - 103,095,999 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,209,992 - 83,346,783 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,113,011 - 103,162,255 (+)NCBIpanpan1.1PanPan1.1panPan2
RCOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,586,259 - 70,637,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,585,567 - 70,627,158 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,018,180 - 70,149,933 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0870,782,695 - 70,914,590 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl870,782,393 - 70,909,263 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,447,029 - 70,578,641 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,511,580 - 70,643,208 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0870,911,508 - 71,043,165 (+)NCBIUU_Cfam_GSD_1.0
Rcor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,396,311 - 3,448,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936835747,477 - 799,703 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936835747,758 - 798,505 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27129,064,892 - 129,203,723 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rcor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,866,830 - 1,972,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,866,886 - 1,972,685 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_007987912   ⟹   XP_007986103
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12480,537,618 - 80,668,909 (+)NCBI
Vero_WHO_p1.0NW_02366605367,729,436 - 67,862,816 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007986103 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007986103   ⟸   XM_007987912


Additional Information

Database Acc Id Source(s)
NCBI Gene RCOR1 ENTREZGENE