TMEM109 (transmembrane protein 109) - Rat Genome Database

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Gene: TMEM109 (transmembrane protein 109) Chlorocebus sabaeus
Analyze
Symbol: TMEM109
Name: transmembrane protein 109
RGD ID: 18663032
Description: INVOLVED IN cellular response to gamma radiation (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); negative regulation of programmed cell death (ortholog); ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,924,736 - 12,934,755 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,924,606 - 12,934,810 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,293,096 - 110,302,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMEM109
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1112,924,736 - 12,934,755 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl112,924,606 - 12,934,810 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,293,096 - 110,302,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TMEM109
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,914,158 - 60,923,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,913,907 - 60,923,443 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,681,630 - 60,690,915 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,438,253 - 60,447,491 (+)NCBINCBI36Build 36hg18NCBI36
Celera1158,042,259 - 58,051,802 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1157,027,540 - 57,037,083 (+)NCBIHuRef
CHM1_11160,547,675 - 60,557,219 (+)NCBICHM1_1
T2T-CHM13v2.01160,865,308 - 60,874,594 (+)NCBIT2T-CHM13v2.0
Tmem109
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391910,848,021 - 10,859,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1910,848,024 - 10,859,365 (-)EnsemblGRCm39 Ensembl
GRCm381910,870,657 - 10,881,743 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1910,870,660 - 10,882,001 (-)EnsemblGRCm38mm10GRCm38
MGSCv371910,945,150 - 10,956,233 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361910,937,705 - 10,948,788 (-)NCBIMGSCv36mm8
Celera1911,563,729 - 11,574,942 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map197.29NCBI
Tmem109
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,944,516 - 216,955,091 (-)NCBIGRCr8
mRatBN7.21207,519,628 - 207,530,245 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,519,624 - 207,530,215 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,894,466 - 215,905,041 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01222,955,182 - 222,965,747 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01215,648,854 - 215,659,431 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01226,925,114 - 226,935,710 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1226,925,117 - 226,935,689 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01233,990,663 - 234,001,279 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,368,573 - 213,379,148 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11213,527,004 - 213,537,578 (-)NCBI
Celera1205,012,212 - 205,022,789 (-)NCBICelera
Cytogenetic Map1q43NCBI
Tmem109
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,562,206 - 5,565,267 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,557,322 - 5,564,866 (+)NCBIChiLan1.0ChiLan1.0
TMEM109
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2962,083,184 - 62,092,709 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,127,455 - 63,136,746 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01156,177,335 - 56,186,645 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,617,802 - 59,627,349 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,617,802 - 59,627,349 (+)Ensemblpanpan1.1panPan2
TMEM109
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11855,377,331 - 55,389,810 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1855,363,698 - 55,385,587 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1853,950,499 - 53,963,229 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01856,425,747 - 56,438,173 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1856,425,747 - 56,434,036 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11855,483,265 - 55,495,701 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01855,104,766 - 55,117,373 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01855,985,877 - 55,998,618 (-)NCBIUU_Cfam_GSD_1.0
Tmem109
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494711,895,525 - 11,912,018 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,009,162 - 2,019,426 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,009,357 - 2,019,381 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM109
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl210,828,652 - 10,837,062 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1210,828,644 - 10,837,124 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,372,979 - 10,382,064 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tmem109
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624926278,541 - 285,934 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624926278,602 - 285,772 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007996568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000004296   ⟹   ENSCSAP00000002551
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl112,924,606 - 12,934,810 (-)Ensembl
RefSeq Acc Id: XM_007996568   ⟹   XP_007994759
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1112,924,736 - 12,934,755 (-)NCBI
Vero_WHO_p1.0NW_023666038110,293,096 - 110,302,880 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007994759 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000002551.1
RefSeq Acc Id: XP_007994759   ⟸   XM_007996568
- UniProtKB: A0A0D9R1R2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000002551   ⟸   ENSCSAT00000004296


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006257 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004296.1 UniProtKB/TrEMBL
InterPro TMEM109 UniProtKB/TrEMBL
KEGG Report csab:103234583 UniProtKB/TrEMBL
NCBI Gene TMEM109 ENTREZGENE
PANTHER PTHR14550 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 109 UniProtKB/TrEMBL
Pfam BRI3BP UniProtKB/TrEMBL
UniProt A0A0D9R1R2 ENTREZGENE, UniProtKB/TrEMBL