PABIR3 (PABIR family member 3) - Rat Genome Database

Name: PABIR3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PABIR3 (PABIR family member 3) Chlorocebus sabaeus

Analyze

Symbol:

PABIR3

Name:

PABIR family member 3

RGD ID:

18660841

Description:

ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

FAM122C; family with sequence similarity 122C; protein FAM122C

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	109,971,573 - 110,034,004 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666065	47,578,030 - 47,659,784 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

PABIR3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	109,971,573 - 110,034,004 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666065	47,578,030 - 47,659,784 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

PABIR3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	134,796,364 - 134,864,771 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	134,796,395 - 134,854,835 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	133,930,394 - 133,998,801 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	133,768,890 - 133,816,282 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	134,317,202 - 134,375,405 (+)	NCBI		Celera
Cytogenetic Map	X	q26.3	NCBI
HuRef	X	123,328,560 - 123,386,388 (+)	NCBI		HuRef
CHM1_1	X	133,841,887 - 133,900,001 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	133,121,428 - 133,189,846 (+)	NCBI		T2T-CHM13v2.0

Pabir3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	52,362,296 - 52,420,063 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	52,362,301 - 52,420,062 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	53,273,419 - 53,331,186 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	53,273,424 - 53,331,185 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	50,626,610 - 50,654,678 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	49,518,060 - 49,575,812 (+)	NCBI		MGSCv36	mm8
MGSCv36	X	38,891,703 - 38,948,725 (+)	NCBI		MGSCv36	mm8
Celera	X	40,698,754 - 40,726,909 (+)	NCBI		Celera
Cytogenetic Map	X	A5	NCBI
cM Map	X	29.45	NCBI

Pabir3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	137,939,690 - 138,003,322 (+)	NCBI		GRCr8
mRatBN7.2	X	133,020,162 - 133,083,801 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	133,020,190 - 133,083,805 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	X	157,786,558 - 157,848,875 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	157,786,730 - 157,848,842 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	152,412,029 - 152,474,170 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	140,228,974 - 140,288,556 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Cytogenetic Map	X	q36	NCBI

PABIR3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	134,231,707 - 134,291,435 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	134,235,305 - 134,295,501 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	123,945,305 - 124,005,318 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	134,241,021 - 134,300,941 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	134,241,315 - 134,300,941 (+)	Ensembl	panpan1.1		panPan2

LOC611751
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	105,418,344 - 105,496,195 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	105,418,393 - 105,464,613 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	91,529,088 - 91,607,149 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	107,280,786 - 107,359,012 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	107,280,834 - 107,327,140 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	104,691,672 - 104,769,745 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	106,557,848 - 106,629,587 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	106,349,350 - 106,427,344 (+)	NCBI		UU_Cfam_GSD_1.0

PABIR3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	110,619,227 - 110,682,249 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	126,483,972 - 126,547,196 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007992767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007992768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007992769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007992770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007992771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007992772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037989163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037989164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037989165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037989166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037989167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037989168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_007992772 ⟹ XP_007990963

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	X	109,971,579 - 110,034,004 (+)	NCBI
Vero_WHO_p1.0	NW_023666065	47,578,030 - 47,633,779 (+)	NCBI

Sequence:

show sequence

TTGTTCTTCCCCACCTGGGGCGCTTTGCTCATTGTTTCTTACTTATCTTATCAGGACTCCACAA
ACTCTCAATCCTCACCACTTGAATGGCCCTGGGGAAGAGAAGGCCATTGCATTGAAATGTAATC
GTTATGAAATTGCTTTCAAAATTCAGCCAGAAATAATAATTTTGCCTGCCTCTTTTCAATTATC
CCATACTAAACTTGCCAAGGCCAATTGTCATTTTATTCCTCACTGTTTATGCTTTCTGCCTGCA
GTATGAGGGATTTGTAAGTACTTTTAGATGGTTTCCTTTAAATTGCCTGTATTTTTCTCCCAGC
TAGATTAGAAACAACAACCTCTGTTTTTGAGCAACTTAGGTATCTCTTTTTATCTCAAGGTCTC
AGCAACCCTTTAGGCCAGCCCCACCTCCTACTCCCTGCTCAAAAGAAATTATAATACATTCTTT
TGTTCACAGTAGCTACTAAACAATCATTTGTTGAGGAGGCACATGCACTGATCCCAGGAGCTTA
ACAATTTAGGAGAACAAGAGGAGAAGAATGCTACTTTGGCCATCATTTCTAGGTGAGGGCCTGG
GACACAGGGCAGCAGACTGGGATATGCAGAGAAGAGTAGCCTAATTGTCAAGTCTAGATCTAAC
AAAAACTGTCCCAAGATCATGGCATATTTCCCTGGAACTGGAAGAACTGATCAAGAAACACAGC
TAGTCGACTTGTCCTTGTGTGAACGGCAGCCGGAAAGCCTTGAGAACTTATTCCTCGACCCGGA
CATGGCACAGGAGAAAATGGAAGTAGGTTTCGAATCGCTGCCGAGTTCCACTACCGCAGACAGC
AACATTCCGAGAAGAGTCAACAGTGCCCCTTTGATCAATGGACTTGGTTTTAATTCACAGGTGT
TGCAAGCTGACACGTTAAGAATTAGGACAAACAGAGCAATGTTTAAGAATCGACGCTGTCTGTT
GTTGCCACCTTCTCCCTTTCATGGTTCCATCAGCCGCCTTCATCAAATCAAACAGGAAGAAGCC
ATGAATTTAATAACTAGAGAAACAATGTATGAATGGAAAATACAAACTGAGATACAGATAAGTC
AATCTTGGGAAGAAGGCTTGAAACTGAATGACAACGGCTCACAGAAATCATCCTCTCTAAAGTG
CATTGATTTAACACCAGTATCCTCAATGGCTTCTTCCATCAAGAAGACTGGGAAGCAGTGTTTC
TCTCCATCATTACAAACTTGTGTGAGTTGCACTGGTTCTCCTTCAGGTCACATTCCCAGTCCTA
CGCAACAATACATCATAAGAAGTCAAAATCCTACCAACATTATTAGACCAAGTATCCTTGGACC
ATTAAAAAGAAAAGGTGAAATGGCATTTCAATATCAACCAAAAAGGATTTTCCAAGGCACAACC
AACATACTTTCTTCTGATACTTCCCAACTGTCAGAAAATAATGGGTGTCTATTTCCAGCTACTT
TTGATGGAAACAACAGCAATGCTGGGTCTTTTGGTAATTCATCAACTGAAATCGGCACTGTCAC
AAACTCTCCTTTGTCAACTTCTGATACTGGTTCTCATTTGTTCTAGTAGTTGAACTTTCAACTA
AATGGTTCACCCATCCCAAGACTTTCTCACCAATGGAGAAACACACACATCAAGCAAACCAAGT
CAGAGCAATG

hide sequence

RefSeq Acc Id:

XM_037989163 ⟹ XP_037845091

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666065	47,578,104 - 47,634,174 (+)	NCBI

RefSeq Acc Id:

XM_037989164 ⟹ XP_037845092

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666065	47,578,103 - 47,634,174 (+)	NCBI

RefSeq Acc Id:

XM_037989165 ⟹ XP_037845093

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666065	47,578,102 - 47,634,174 (+)	NCBI

RefSeq Acc Id:

XM_037989166 ⟹ XP_037845094

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666065	47,581,117 - 47,659,784 (+)	NCBI

RefSeq Acc Id:

XM_037989167 ⟹ XP_037845095

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666065	47,581,116 - 47,659,784 (+)	NCBI

RefSeq Acc Id:

XM_037989168 ⟹ XP_037845096

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666065	47,581,093 - 47,585,331 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007990963	(Get FASTA)	NCBI Sequence Viewer
	XP_037845091	(Get FASTA)	NCBI Sequence Viewer
	XP_037845092	(Get FASTA)	NCBI Sequence Viewer
	XP_037845093	(Get FASTA)	NCBI Sequence Viewer
	XP_037845094	(Get FASTA)	NCBI Sequence Viewer
	XP_037845095	(Get FASTA)	NCBI Sequence Viewer
	XP_037845096	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_007990963 ⟸ XM_007992772
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_037845093 ⟸ XM_037989165
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037845092 ⟸ XM_037989164
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_037845091 ⟸ XM_037989163
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037845096 ⟸ XM_037989168
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_037845095 ⟸ XM_037989167
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_037845094 ⟸ XM_037989166
- Peptide Label:	isoform X4

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	FAM122C	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-10-13	PABIR3	PABIR family member 3	FAM122C	family with sequence similarity 122C	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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