KIFC1 (kinesin family member C1) - Rat Genome Database

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Gene: KIFC1 (kinesin family member C1) Chlorocebus sabaeus
Analyze
Symbol: KIFC1
Name: kinesin family member C1
RGD ID: 18660560
Description: ENCODES a protein that exhibits ATP binding (inferred); cytoskeletal motor activity (inferred); microtubule binding (inferred); INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 5 (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (inferred); cytoskeleton (inferred); microtubule (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIFC1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,656,517 - 38,675,056 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,656,246 - 38,674,470 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,240,536 - 33,258,617 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KIFC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,656,517 - 38,675,056 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,656,246 - 38,674,470 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604433,240,536 - 33,258,617 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KIFC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,391,461 - 33,409,896 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,391,823 - 33,409,896 (+)EnsemblGRCh38hg38GRCh38
GRCh37633,359,600 - 33,377,673 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,467,583 - 33,485,625 (+)NCBINCBI36Build 36hg18NCBI36
Celera634,913,703 - 34,932,095 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef633,101,381 - 33,119,773 (+)NCBIHuRef
CHM1_1633,361,187 - 33,379,567 (+)NCBICHM1_1
T2T-CHM13v2.0633,212,742 - 33,231,258 (+)NCBIT2T-CHM13v2.0
Kifc5b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,136,065 - 27,151,553 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,136,065 - 27,151,557 (+)EnsemblGRCm39 Ensembl
GRCm381726,917,091 - 26,932,579 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,917,091 - 26,932,583 (+)EnsemblGRCm38mm10GRCm38
MGSCv371727,054,036 - 27,069,524 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,644,739 - 26,659,838 (+)NCBIMGSCv36mm8
Celera1727,453,616 - 27,469,189 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.6NCBI
Kifc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,000,929 - 5,018,967 (+)NCBIGRCr8
mRatBN7.2204,998,832 - 5,017,107 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,999,047 - 5,017,105 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,722,546 - 5,742,381 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,084,291 - 5,104,118 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,564,478 - 5,582,550 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,509,059 - 5,526,175 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,509,059 - 5,526,175 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,567,671 - 7,585,188 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,150,810 - 5,169,264 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1205,151,036 - 5,169,489 (+)NCBI
Celera206,581,869 - 6,599,528 (+)NCBICelera
Cytogenetic Map20p12NCBI
Kifc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,923,506 - 1,940,970 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,923,136 - 1,941,094 (+)NCBIChiLan1.0ChiLan1.0
KIFC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2547,876,580 - 47,894,889 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1643,743,866 - 43,761,938 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0632,971,033 - 32,989,129 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1634,081,586 - 34,100,591 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,078,842 - 34,100,373 (+)Ensemblpanpan1.1panPan2
KIFC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,808,374 - 2,821,203 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,808,705 - 2,821,217 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,889,201 - 2,901,948 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0123,140,027 - 3,152,781 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,140,220 - 3,152,876 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,807,166 - 2,819,907 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,888,268 - 2,901,012 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,986,376 - 2,999,127 (+)NCBIUU_Cfam_GSD_1.0
Kifc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,457,125 - 38,472,793 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,487,503 - 25,546,359 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,488,426 - 25,503,135 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIFC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,694,778 - 29,713,712 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1729,692,775 - 29,713,716 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,198,547 - 34,212,734 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Kifc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,410,007 - 23,413,902 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475423,405,951 - 23,421,696 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 36 18 36
Below cutoff 2 24

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000007658   ⟹   ENSCSAP00000005832
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1738,656,246 - 38,674,470 (-)Ensembl
RefSeq Acc Id: XM_007972938   ⟹   XP_007971129
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11738,656,517 - 38,675,055 (-)NCBI
Vero_WHO_p1.0NW_02366604433,240,536 - 33,258,617 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007972939   ⟹   XP_007971130
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11738,656,544 - 38,675,056 (-)NCBI
Vero_WHO_p1.0NW_02366604433,240,562 - 33,257,056 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038005971   ⟹   XP_037861899
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604433,240,536 - 33,257,056 (+)NCBI
RefSeq Acc Id: XM_038005972   ⟹   XP_037861900
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604433,240,536 - 33,257,056 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007971129 (Get FASTA)   NCBI Sequence Viewer  
  XP_007971130 (Get FASTA)   NCBI Sequence Viewer  
  XP_037861899 (Get FASTA)   NCBI Sequence Viewer  
  XP_037861900 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005832
  ENSCSAP00000005832.1
Reference Protein Sequences
RefSeq Acc Id: XP_007971129   ⟸   XM_007972938
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RB43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007971130   ⟸   XM_007972939
- Peptide Label: isoform X3
RefSeq Acc Id: ENSCSAP00000005832   ⟸   ENSCSAT00000007658
RefSeq Acc Id: XP_037861899   ⟸   XM_038005971
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037861900   ⟸   XM_038005972
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009576 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007658.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report csab:103221660 UniProtKB/TrEMBL
NCBI Gene KIFC1 ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KLP-3 UniProtKB/TrEMBL
  PROTEIN CLARET SEGREGATIONAL UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9RB43 ENTREZGENE, UniProtKB/TrEMBL