UBLCP1 (ubiquitin like domain containing CTD phosphatase 1) - Rat Genome Database

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Gene: UBLCP1 (ubiquitin like domain containing CTD phosphatase 1) Chlorocebus sabaeus
Analyze
Symbol: UBLCP1
Name: ubiquitin like domain containing CTD phosphatase 1
RGD ID: 18657880
Description: ENCODES a protein that exhibits proteasome regulatory particle binding (ortholog); INVOLVED IN regulation of proteasome assembly (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-like domain-containing CTD phosphatase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12361,664,467 - 61,686,874 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2361,664,677 - 61,687,433 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603415,933,584 - 15,955,836 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleoplasm  (ISO)
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UBLCP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12361,664,467 - 61,686,874 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2361,664,677 - 61,687,433 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603415,933,584 - 15,955,836 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
UBLCP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385159,263,290 - 159,286,036 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5159,263,290 - 159,286,036 (+)EnsemblGRCh38hg38GRCh38
GRCh375158,690,298 - 158,713,044 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365158,622,876 - 158,645,617 (+)NCBINCBI36Build 36hg18NCBI36
Celera5154,720,940 - 154,743,899 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5153,784,215 - 153,807,159 (+)NCBIHuRef
CHM1_15158,122,533 - 158,145,488 (+)NCBICHM1_1
T2T-CHM13v2.05159,791,779 - 159,814,534 (+)NCBIT2T-CHM13v2.0
Ublcp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391144,345,398 - 44,361,540 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1144,345,398 - 44,361,325 (-)EnsemblGRCm39 Ensembl
GRCm381144,454,571 - 44,470,713 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1144,454,571 - 44,470,498 (-)EnsemblGRCm38mm10GRCm38
MGSCv371144,268,073 - 44,284,050 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361144,297,996 - 44,313,868 (-)NCBIMGSCv36mm8
Celera1117,009,149 - 17,013,836 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.94NCBI
Ublcp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81029,447,081 - 29,462,446 (-)NCBIGRCr8
mRatBN7.21028,945,690 - 28,961,103 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1028,945,698 - 28,960,996 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1033,690,046 - 33,705,356 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0102,228,449 - 2,243,759 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01028,660,657 - 28,675,967 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01030,103,607 - 30,118,945 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1030,103,613 - 30,118,873 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01029,936,811 - 29,952,143 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41029,612,055 - 29,627,325 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11029,613,103 - 29,628,374 (-)NCBI
Celera1028,424,577 - 28,439,847 (-)NCBICelera
Cytogenetic Map10q21NCBI
Ublcp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540813,259,328 - 13,279,574 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540813,259,328 - 13,279,509 (+)NCBIChiLan1.0ChiLan1.0
UBLCP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24154,449,198 - 154,472,275 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15152,588,746 - 152,611,827 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05154,655,018 - 154,677,794 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15161,271,839 - 161,294,639 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5161,271,844 - 161,294,643 (+)Ensemblpanpan1.1panPan2
UBLCP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1451,218,471 - 51,237,661 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl451,218,928 - 51,234,198 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha451,111,527 - 51,130,760 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0451,653,336 - 51,672,559 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl451,653,332 - 51,672,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1451,482,378 - 51,501,638 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0451,587,989 - 51,607,229 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0452,104,659 - 52,123,934 (-)NCBIUU_Cfam_GSD_1.0
Ublcp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213105,643,923 - 105,662,457 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365154,096,146 - 4,112,234 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365154,093,255 - 4,111,616 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBLCP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1664,178,941 - 64,205,675 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11664,182,918 - 64,205,684 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21670,006,436 - 70,029,004 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ublcp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473330,179,102 - 30,201,768 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473330,166,045 - 30,202,081 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 31 58
Low 5 20 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008015173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000008557   ⟹   ENSCSAP00000006701
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2361,664,677 - 61,687,433 (+)Ensembl
RefSeq Acc Id: XM_008015173   ⟹   XP_008013364
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12361,664,467 - 61,686,874 (+)NCBI
Vero_WHO_p1.0NW_02366603415,933,584 - 15,955,836 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008013364 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000006701
  ENSCSAP00000006701.1
Reference Protein Sequences
RefSeq Acc Id: XP_008013364   ⟸   XM_008015173
- UniProtKB: A0A0D9RDL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000006701   ⟸   ENSCSAT00000008557


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000010476 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000008557.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
InterPro FCP1_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD-SF_hydro_IIID UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report csab:103244891 UniProtKB/TrEMBL
NCBI Gene UBLCP1 ENTREZGENE
PANTHER UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 UniProtKB/TrEMBL
  UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1 UniProtKB/TrEMBL
Pfam NIF UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PROSITE FCP1 UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART CPDc UniProtKB/TrEMBL
  UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
  SSF56784 UniProtKB/TrEMBL
UniProt A0A0D9RDL2 ENTREZGENE, UniProtKB/TrEMBL