PMF1 (polyamine modulated factor 1) - Rat Genome Database

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Gene: PMF1 (polyamine modulated factor 1) Chlorocebus sabaeus
Analyze
Symbol: PMF1
Name: polyamine modulated factor 1
RGD ID: 18656968
Description: ENCODES a protein that exhibits leucine zipper domain binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cell division (inferred); chromosome segregation (inferred); ASSOCIATED WITH bladder carcinoma (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polyamine-modulated factor 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,627,084 - 7,655,751 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,627,524 - 7,655,724 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,919,605 - 6,949,961 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PMF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,627,084 - 7,655,751 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,627,524 - 7,655,724 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,919,605 - 6,949,961 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PMF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,213,007 - 156,240,042 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,212,993 - 156,240,042 (+)EnsemblGRCh38hg38GRCh38
GRCh371156,182,798 - 156,209,833 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,449,408 - 154,476,457 (+)NCBINCBI36Build 36hg18NCBI36
Build 341152,995,888 - 153,022,899NCBI
Celera1129,255,764 - 129,282,815 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1127,544,511 - 127,570,967 (+)NCBIHuRef
CHM1_11157,578,747 - 157,605,841 (+)NCBICHM1_1
T2T-CHM13v2.01155,351,461 - 155,378,502 (+)NCBIT2T-CHM13v2.0
Pmf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39388,301,445 - 88,317,752 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl388,301,450 - 88,317,638 (-)EnsemblGRCm39 Ensembl
GRCm38388,394,138 - 88,410,445 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,394,143 - 88,410,331 (-)EnsemblGRCm38mm10GRCm38
MGSCv37388,198,065 - 88,214,238 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,480,070 - 88,496,243 (-)NCBIMGSCv36mm8
Celera388,433,784 - 88,449,956 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.82NCBI
Pmf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,145,896 - 176,166,022 (-)NCBIGRCr8
mRatBN7.22173,848,074 - 173,868,272 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,848,074 - 173,868,270 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,992,811 - 181,012,347 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,015,172 - 179,034,708 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,615,181 - 173,634,763 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,751,770 - 187,771,933 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,751,776 - 187,771,865 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,154,781 - 207,174,337 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,492,380 - 180,511,936 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2167,793,331 - 167,812,873 (-)NCBICelera
Cytogenetic Map2q34NCBI
PMF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,605,235 - 93,631,577 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1193,337,133 - 93,363,475 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,556,843 - 131,583,180 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,387,760 - 135,412,907 (+)NCBIpanpan1.1PanPan1.1panPan2
LOC101978306
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,424,183 - 26,449,218 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,454,580 - 5,479,884 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,454,574 - 5,479,600 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 16 16
Low 20 20 44
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000000124   ⟹   ENSCSAP00000015928
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl207,627,524 - 7,655,724 (-)Ensembl
RefSeq Acc Id: XM_007976750   ⟹   XP_007974941
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1207,627,084 - 7,655,751 (-)NCBI
Vero_WHO_p1.0NW_0236660386,919,605 - 6,949,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007976753   ⟹   XP_007974944
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1207,627,084 - 7,655,751 (-)NCBI
Vero_WHO_p1.0NW_0236660386,920,060 - 6,949,961 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007974941 (Get FASTA)   NCBI Sequence Viewer  
  XP_007974944 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015928
  ENSCSAP00000015928.1
Reference Protein Sequences
RefSeq Acc Id: XP_007974944   ⟸   XM_007976753
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007974941   ⟸   XM_007976750
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S4Y9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000015928   ⟸   ENSCSAT00000000124


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002107 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000124.1 UniProtKB/TrEMBL
InterPro PMF1/Nnf1 UniProtKB/TrEMBL
KEGG Report csab:103223842 UniProtKB/TrEMBL
NCBI Gene PMF1 ENTREZGENE
PANTHER POLYAMINE-MODULATED FACTOR 1 UniProtKB/TrEMBL
  PTHR15459 UniProtKB/TrEMBL
Pfam Nnf1 UniProtKB/TrEMBL
UniProt A0A0D9S4Y9 ENTREZGENE, UniProtKB/TrEMBL