CR2 (complement C3d receptor 2) - Rat Genome Database

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Gene: CR2 (complement C3d receptor 2) Chlorocebus sabaeus
Analyze
Symbol: CR2
Name: complement C3d receptor 2
RGD ID: 18655250
Description: ENCODES a protein that exhibits complement receptor activity (ortholog); signaling receptor activity (ortholog); INVOLVED IN bone development (ortholog); cartilage development (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: complement receptor type 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12521,914,690 - 21,954,244 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2521,919,393 - 21,953,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605522,536,015 - 22,575,130 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12521,914,690 - 21,954,244 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2521,919,393 - 21,953,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605522,536,015 - 22,575,130 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381207,454,328 - 207,489,892 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1207,453,024 - 207,489,895 (+)EnsemblGRCh38hg38GRCh38
GRCh371207,627,673 - 207,663,237 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,694,293 - 205,729,863 (+)NCBINCBI36Build 36hg18NCBI36
Build 341204,016,064 - 204,051,633NCBI
Celera1180,876,666 - 180,912,267 (+)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1178,320,710 - 178,356,313 (+)NCBIHuRef
CHM1_11208,900,385 - 208,935,976 (+)NCBICHM1_1
T2T-CHM13v2.01206,719,629 - 206,755,209 (+)NCBIT2T-CHM13v2.0
Cr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,819,120 - 194,859,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,819,119 - 194,859,024 (-)EnsemblGRCm39 Ensembl
GRCm381195,136,811 - 195,176,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,136,811 - 195,176,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,963,005 - 197,002,909 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,840,394 - 196,877,439 (-)NCBIMGSCv36mm8
Celera1202,035,969 - 202,075,750 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.44NCBI
Cr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813109,207,034 - 109,244,980 (-)NCBIGRCr8
mRatBN7.213106,678,579 - 106,716,595 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13106,685,413 - 106,716,235 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13109,202,762 - 109,233,397 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013110,586,602 - 110,617,233 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013107,811,075 - 107,841,707 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013113,890,274 - 113,927,824 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13113,890,272 - 113,927,877 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013118,580,480 - 118,618,039 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413111,078,338 - 111,113,667 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113111,281,069 - 111,300,233 (-)NCBI
Celera13106,107,601 - 106,138,227 (-)NCBICelera
Cytogenetic Map13q27NCBI
Cr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,876,966 - 42,911,564 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,877,041 - 42,910,970 (+)NCBIChiLan1.0ChiLan1.0
CR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2141,889,483 - 41,926,416 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1141,855,514 - 41,892,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01183,052,798 - 183,088,385 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11187,330,483 - 187,366,069 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1187,330,483 - 187,366,069 (+)Ensemblpanpan1.1panPan2
Cr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,006,478 - 68,043,276 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365575,246,770 - 5,256,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Cr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,152,230 - 4,179,211 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,149,472 - 4,179,269 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CR2
939 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
17 5 20 22 22 15 3

Sequence


Ensembl Acc Id: ENSCSAT00000013271   ⟹   ENSCSAP00000011275
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2521,919,393 - 21,953,659 (-)Ensembl
RefSeq Acc Id: XM_007988623   ⟹   XP_007986814
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12521,914,690 - 21,954,244 (-)NCBI
Vero_WHO_p1.0NW_02366605522,536,015 - 22,575,130 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007988624   ⟹   XP_007986815
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12521,914,690 - 21,954,240 (-)NCBI
Vero_WHO_p1.0NW_02366605522,536,015 - 22,575,130 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007986814 (Get FASTA)   NCBI Sequence Viewer  
  XP_007986815 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011275.1
RefSeq Acc Id: XP_007986814   ⟸   XM_007988623
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RRN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007986815   ⟸   XM_007988624
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RRN6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000011275   ⟸   ENSCSAT00000013271


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015180 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013271.1 UniProtKB/TrEMBL
Gene3D-CATH Complement Module, domain 1 UniProtKB/TrEMBL
InterPro Compl-Cell_Adhes-Reg UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
KEGG Report csab:103230175 UniProtKB/TrEMBL
NCBI Gene CR2 ENTREZGENE
PANTHER COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING UniProtKB/TrEMBL
  SUSHI, VON WILLEBRAND FACTOR TYPE A, EGF AND PENTRAXIN DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam Sushi UniProtKB/TrEMBL
PROSITE SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
Superfamily-SCOP SSF57535 UniProtKB/TrEMBL
UniProt A0A0D9RRN6 ENTREZGENE, UniProtKB/TrEMBL