NCAPH2 (non-SMC condensin II complex subunit H2) - Rat Genome Database

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Gene: NCAPH2 (non-SMC condensin II complex subunit H2) Chlorocebus sabaeus
Analyze
Symbol: NCAPH2
Name: non-SMC condensin II complex subunit H2
RGD ID: 18654107
Description: ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN chromosome condensation (inferred); female meiosis chromosome separation (inferred); female meiotic nuclear division (inferred); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog); FOUND IN cell junction (inferred); chromosome (inferred); condensed chromosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: condensin-2 complex subunit H2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,978,771 - 32,995,055 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,978,562 - 32,997,160 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,346,255 - 92,356,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NCAPH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,978,771 - 32,995,055 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,978,562 - 32,997,160 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,346,255 - 92,356,666 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NCAPH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,508,224 - 50,524,780 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,508,224 - 50,524,780 (+)EnsemblGRCh38hg38GRCh38
GRCh372250,946,653 - 50,963,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,293,511 - 49,308,782 (+)NCBINCBI36Build 36hg18NCBI36
Celera2234,822,672 - 34,839,236 (+)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,837,777 - 33,854,227 (+)NCBIHuRef
CHM1_12250,905,383 - 50,921,946 (+)NCBICHM1_1
T2T-CHM13v2.02251,018,752 - 51,035,345 (+)NCBIT2T-CHM13v2.0
Ncaph2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,239,920 - 89,257,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,239,922 - 89,257,029 (+)EnsemblGRCm39 Ensembl
GRCm381589,355,719 - 89,372,850 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,355,719 - 89,372,826 (+)EnsemblGRCm38mm10GRCm38
MGSCv371589,186,153 - 89,203,259 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,183,539 - 89,200,593 (+)NCBIMGSCv36mm8
Celera1591,484,861 - 91,501,969 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.84NCBI
Ncaph2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,302,550 - 122,319,570 (+)NCBIGRCr8
mRatBN7.27120,422,926 - 120,439,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,422,956 - 120,439,938 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,173,646 - 122,191,436 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,399,800 - 124,417,590 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,362,467 - 124,380,299 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,326,597 - 130,343,655 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,326,600 - 130,342,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,011,904 - 130,028,836 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,650,768 - 127,666,461 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7116,890,045 - 116,911,675 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ncaph2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541333,492,348 - 33,503,804 (+)NCBIChiLan1.0ChiLan1.0
NCAPH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,428,408 - 60,444,629 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,119,266 - 63,134,153 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,754,994 - 30,771,103 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,872,496 - 49,881,027 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,873,223 - 49,881,027 (+)Ensemblpanpan1.1panPan2
NCAPH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,790,137 - 16,801,851 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,741,761 - 16,801,824 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,767,846 - 16,779,558 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,516,609 - 17,528,431 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,515,284 - 17,528,433 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,240,896 - 17,252,608 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,563,917 - 17,575,625 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,696,140 - 17,707,852 (-)NCBIUU_Cfam_GSD_1.0
Ncaph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945320,877 - 332,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629321,011 - 327,607 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629320,885 - 327,290 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAPH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5221,471 - 233,475 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15222,784 - 233,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,546,808 - 110,557,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ncaph2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752258,039 - 268,737 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752257,885 - 268,971 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NCAPH2
341 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000002857   ⟹   ENSCSAP00000001151
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1932,978,562 - 32,997,160 (+)Ensembl
RefSeq Acc Id: XM_038007232   ⟹   XP_037863160
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,346,255 - 92,356,666 (-)NCBI
RefSeq Acc Id: XM_038007233   ⟹   XP_037863161
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,347,538 - 92,356,664 (-)NCBI
RefSeq Acc Id: XM_038007234   ⟹   XP_037863162
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,347,533 - 92,355,294 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037863160 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863161 (Get FASTA)   NCBI Sequence Viewer  
  XP_037863162 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001151.1
Ensembl Acc Id: ENSCSAP00000001151   ⟸   ENSCSAT00000002857
RefSeq Acc Id: XP_037863160   ⟸   XM_038007232
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QXR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037863162   ⟸   XM_038007234
- Peptide Label: isoform X3
- UniProtKB: A0A0D9QXR2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037863161   ⟸   XM_038007233
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QXR2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004824 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002857.1 UniProtKB/TrEMBL
InterPro CNDH2_C UniProtKB/TrEMBL
  H2_M UniProtKB/TrEMBL
  H2_N UniProtKB/TrEMBL
  Ncaph2 UniProtKB/TrEMBL
NCBI Gene NCAPH2 ENTREZGENE
PANTHER CONDENSIN-2 COMPLEX SUBUNIT H2 UniProtKB/TrEMBL
  PTHR14324 UniProtKB/TrEMBL
Pfam CNDH2_C UniProtKB/TrEMBL
  CNDH2_M UniProtKB/TrEMBL
  CNDH2_N UniProtKB/TrEMBL
UniProt A0A0D9QXR2 ENTREZGENE, UniProtKB/TrEMBL