PXDNL (peroxidasin like) - Rat Genome Database

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Gene: PXDNL (peroxidasin like) Chlorocebus sabaeus
Analyze
Symbol: PXDNL
Name: peroxidasin like
RGD ID: 18650970
Description: ENCODES a protein that exhibits heme binding (inferred); lactoperoxidase activity (inferred); metal ion binding (inferred); INVOLVED IN cellular oxidant detoxification (inferred); response to oxidative stress (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peroxidasin-like protein
RGD Orthologs
Human
Chinchilla
Bonobo
Dog
Squirrel
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1847,379,170 - 47,923,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl847,416,979 - 47,598,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603994,319,362 - 94,618,726 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PXDNL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1847,379,170 - 47,923,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl847,416,979 - 47,598,365 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603994,319,362 - 94,618,726 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PXDNL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38851,319,577 - 51,809,445 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl851,319,577 - 51,809,445 (-)EnsemblGRCh38hg38GRCh38
GRCh37852,232,137 - 52,722,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36852,394,690 - 52,884,558 (-)NCBINCBI36Build 36hg18NCBI36
Celera848,220,418 - 48,712,670 (-)NCBICelera
Cytogenetic Map8q11.22-q11.23NCBI
HuRef847,697,990 - 48,190,496 (-)NCBIHuRef
CHM1_1852,284,406 - 52,774,456 (-)NCBICHM1_1
T2T-CHM13v2.0851,692,630 - 52,185,430 (-)NCBIT2T-CHM13v2.0
Pxdnl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545410,993,294 - 11,442,351 (-)NCBIChiLan1.0ChiLan1.0
PXDNL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2766,959,536 - 67,308,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1842,686,264 - 43,033,305 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0847,748,682 - 48,230,125 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1845,132,928 - 45,366,150 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl845,133,241 - 45,612,879 (-)Ensemblpanpan1.1panPan2
PXDNL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1293,277,291 - 3,706,964 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl293,278,787 - 3,707,064 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha293,720,453 - 4,149,319 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0293,344,508 - 3,776,918 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl293,345,706 - 3,777,286 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1293,276,724 - 3,706,022 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0293,499,904 - 3,930,686 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0293,573,666 - 4,005,696 (-)NCBIUU_Cfam_GSD_1.0
Pxdnl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530375,869,121 - 76,306,548 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365901,059,538 - 1,496,199 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
Pxdnl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247353,995,872 - 4,207,179 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 16 11 36
Below cutoff 15 6 24

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000012839   ⟹   ENSCSAP00000010861
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl847,416,979 - 47,598,365 (-)Ensembl
RefSeq Acc Id: XM_037999837   ⟹   XP_037855765
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603994,319,362 - 94,618,726 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037855765 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000010861.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000010861   ⟸   ENSCSAT00000012839
RefSeq Acc Id: XP_037855765   ⟸   XM_037999837
- UniProtKB: A0A0D9RQH2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000014768 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012839.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.640.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  6.20.200.20 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Haem_peroxidase_animal UniProtKB/TrEMBL
  Haem_peroxidase_sf UniProtKB/TrEMBL
  Haem_peroxidase_sf_animal UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  VWF_dom UniProtKB/TrEMBL
NCBI Gene PXDNL ENTREZGENE
PANTHER OXIDASE/PEROXIDASE UniProtKB/TrEMBL
  PTHR11475:SF38 UniProtKB/TrEMBL
Pfam An_peroxidase UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
PRINTS ANPEROXIDASE UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
  PEROXIDASE_3 UniProtKB/TrEMBL
  VWFC_1 UniProtKB/TrEMBL
  VWFC_2 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  VWC UniProtKB/TrEMBL
Superfamily-SCOP FnI-like domain UniProtKB/TrEMBL
  L domain-like UniProtKB/TrEMBL
  SSF48113 UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A0D9RQH2 ENTREZGENE, UniProtKB/TrEMBL