LOC103246914 (FAM20C golgi associated secretory pathway kinase) - Rat Genome Database

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Gene: LOC103246914 (FAM20C golgi associated secretory pathway kinase) Chlorocebus sabaeus
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Symbol: LOC103246914 (Ensembl: FAM20C)
Name: FAM20C golgi associated secretory pathway kinase
RGD ID: 18649872
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); manganese ion binding (ortholog); protease binding (ortholog); INVOLVED IN biomineral tissue development (ortholog); dentinogenesis (ortholog); enamel mineralization (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); extracellular space (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: extracellular serine/threonine protein kinase FAM20C; FAM20C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12821,299,235 - 21,371,603 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2821,299,213 - 21,371,577 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666090190,813 - 259,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC103246914
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12821,299,235 - 21,371,603 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2821,299,213 - 21,371,577 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666090190,813 - 259,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FAM20C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387192,571 - 260,772 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7192,571 - 260,772 (+)EnsemblGRCh38hg38GRCh38
GRCh377192,571 - 300,738 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367288,052 - 304,059 (+)NCBINCBI36Build 36hg18NCBI36
Build 347288,195 - 304,059NCBI
Celera7211,215 - 273,622 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef7203,619 - 219,084 (+)NCBIHuRef
HuRef7155,848 - 180,386 (+)NCBIHuRef
CHM1_17192,335 - 299,664 (+)NCBICHM1_1
T2T-CHM13v2.07293,238 - 360,993 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27303,573 - 364,808 (+)NCBI
Fam20c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,740,836 - 138,795,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,740,269 - 138,795,832 (+)EnsemblGRCm39 Ensembl
GRCm385138,755,081 - 138,810,063 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,754,514 - 138,810,077 (+)EnsemblGRCm38mm10GRCm38
MGSCv375139,231,035 - 139,286,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,008,742 - 139,063,705 (+)NCBIMGSCv36mm8
Celera5135,807,755 - 135,865,362 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.19NCBI
Fam20c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,940,654 - 20,999,072 (-)NCBIGRCr8
mRatBN7.21215,826,864 - 15,885,423 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,826,871 - 15,884,543 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,638,165 - 16,695,811 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,261,890 - 17,319,536 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,284,652 - 16,341,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,913,771 - 17,972,733 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,913,767 - 17,972,737 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,906,233 - 19,965,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41216,340,407 - 16,399,325 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11216,371,029 - 16,473,541 (-)NCBI
Celera1217,578,522 - 17,635,987 (-)NCBICelera
Cytogenetic Map12q11NCBI
Fam20c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554608,143,824 - 8,193,825 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554608,142,325 - 8,192,044 (+)NCBIChiLan1.0ChiLan1.0
FAM20C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v265,096,988 - 5,181,447 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1753,421,707 - 53,506,134 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07311,468 - 394,623 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17575,633 - 635,643 (+)NCBIpanpan1.1PanPan1.1panPan2
FAM20C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,448,603 - 16,497,064 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,448,588 - 16,497,752 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,920,483 - 17,969,286 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,577,996 - 16,626,815 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,578,012 - 16,628,609 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,380,418 - 16,429,206 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,306,905 - 16,355,670 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,596,937 - 16,645,742 (-)NCBIUU_Cfam_GSD_1.0
Fam20c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344144,360,748 - 144,413,468 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936754596,872 - 653,098 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936754596,878 - 649,585 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM20C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3163,421 - 200,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13159,107 - 200,462 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2389,974 - 94,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fam20c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474025,984,091 - 26,032,649 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474025,984,642 - 26,032,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 44
Low 18 16
Below cutoff 2

Sequence


RefSeq Acc Id: ENSCSAT00000015625   ⟹   ENSCSAP00000013558
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2821,299,213 - 21,371,577 (-)Ensembl
RefSeq Acc Id: XM_037995185   ⟹   XP_037851113
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666090190,813 - 259,923 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037851113 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013558.1
RefSeq Acc Id: ENSCSAP00000013558   ⟸   ENSCSAT00000015625
RefSeq Acc Id: XP_037851113   ⟸   XM_037995185


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017531 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015625.1 UniProtKB/TrEMBL
InterPro FAM20 UniProtKB/TrEMBL
  FAM20_C UniProtKB/TrEMBL
KEGG Report csab:103246914 UniProtKB/TrEMBL
NCBI Gene FAM20C ENTREZGENE
PANTHER EXTRACELLULAR SERINE/THREONINE PROTEIN KINASE FAM20C UniProtKB/TrEMBL
  PTHR12450 UniProtKB/TrEMBL
Pfam Fam20C UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A0D9RY69_CHLSB UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103246914  FAM20C golgi associated secretory pathway kinase  FAM20C  FAM20C golgi associated secretory pathway kinase  Symbol and/or name change 5135510 APPROVED