ANKRD46 (ankyrin repeat domain 46) - Rat Genome Database

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Gene: ANKRD46 (ankyrin repeat domain 46) Chlorocebus sabaeus
Analyze
Symbol: ANKRD46
Name: ankyrin repeat domain 46
RGD ID: 18649126
Description: ASSOCIATED WITH Cohen syndrome (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat domain-containing protein 46
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1895,369,941 - 95,412,737 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl895,369,901 - 95,412,688 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603945,273,760 - 45,316,265 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ANKRD46
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1895,369,941 - 95,412,737 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl895,369,901 - 95,412,688 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603945,273,760 - 45,316,265 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ANKRD46
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388100,509,752 - 100,559,759 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8100,509,752 - 100,559,784 (-)EnsemblGRCh38hg38GRCh38
GRCh378101,521,980 - 101,571,987 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368101,602,176 - 101,641,188 (-)NCBINCBI36Build 36hg18NCBI36
Celera897,718,378 - 97,757,379 (-)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef896,721,557 - 96,771,579 (-)NCBIHuRef
CHM1_18101,562,856 - 101,612,900 (-)NCBICHM1_1
T2T-CHM13v2.08101,635,790 - 101,685,789 (-)NCBIT2T-CHM13v2.0
Ankrd46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391536,477,814 - 36,496,937 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1536,477,814 - 36,496,966 (-)EnsemblGRCm39 Ensembl
GRCm381536,477,668 - 36,496,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1536,477,668 - 36,496,820 (-)EnsemblGRCm38mm10GRCm38
MGSCv371536,407,423 - 36,426,546 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361536,422,257 - 36,441,340 (-)NCBIMGSCv36mm8
Celera1537,105,451 - 37,124,628 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.47NCBI
Ankrd46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8769,532,303 - 69,553,311 (-)NCBIGRCr8
mRatBN7.2767,647,202 - 67,668,180 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl767,647,204 - 67,668,132 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx769,535,611 - 69,556,581 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0771,738,219 - 71,759,188 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0771,606,089 - 71,627,059 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0775,279,443 - 75,300,442 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl775,279,446 - 75,288,365 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0775,427,579 - 75,448,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4771,986,088 - 72,007,057 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1772,006,817 - 72,027,776 (-)NCBI
Celera764,727,370 - 64,748,339 (-)NCBICelera
Cytogenetic Map7q22NCBI
Ankrd46
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541715,740,108 - 15,750,627 (-)NCBIChiLan1.0ChiLan1.0
ANKRD46
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27117,858,556 - 117,910,616 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1893,397,355 - 93,449,431 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0897,151,126 - 97,203,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1899,322,923 - 99,376,251 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl899,322,930 - 99,376,251 (-)Ensemblpanpan1.1panPan2
ANKRD46
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1132,384,007 - 2,415,187 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl132,385,611 - 2,498,364 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,381,125 - 2,412,315 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0132,537,108 - 2,568,299 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl132,537,109 - 2,651,455 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1132,381,669 - 2,412,884 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0132,493,322 - 2,524,543 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0132,510,688 - 2,541,879 (-)NCBIUU_Cfam_GSD_1.0
Ankrd46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530335,329,657 - 35,356,371 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647042,755,799 - 42,782,479 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKRD46
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl436,400,660 - 36,444,335 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1436,400,610 - 36,445,590 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2439,323,164 - 39,368,112 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ankrd46
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247637,416,669 - 7,445,411 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247637,416,669 - 7,445,418 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 60
Low 20
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000010171   ⟹   ENSCSAP00000008269
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl895,369,901 - 95,412,688 (-)Ensembl
RefSeq Acc Id: XM_008001223   ⟹   XP_007999414
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1895,369,941 - 95,412,737 (-)NCBI
Vero_WHO_p1.0NW_02366603945,273,760 - 45,316,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008001224   ⟹   XP_007999415
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1895,369,941 - 95,412,711 (-)NCBI
Vero_WHO_p1.0NW_02366603945,273,787 - 45,316,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038000236   ⟹   XP_037856164
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603945,273,822 - 45,316,265 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007999414 (Get FASTA)   NCBI Sequence Viewer  
  XP_007999415 (Get FASTA)   NCBI Sequence Viewer  
  XP_037856164 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008269
  ENSCSAP00000008269.1
Reference Protein Sequences
RefSeq Acc Id: XP_007999414   ⟸   XM_008001223
- UniProtKB: A0A0D9RI30 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007999415   ⟸   XM_008001224
- UniProtKB: A0A0D9RI30 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008269   ⟸   ENSCSAT00000010171
RefSeq Acc Id: XP_037856164   ⟸   XM_038000236
- UniProtKB: A0A0D9RI30 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010171.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
KEGG Report csab:103237217 UniProtKB/TrEMBL
NCBI Gene ANKRD46 ENTREZGENE
PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ANK_REP_REGION DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A0D9RI30 ENTREZGENE, UniProtKB/TrEMBL