FOXJ3 (forkhead box J3) - Rat Genome Database

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Gene: FOXJ3 (forkhead box J3) Chlorocebus sabaeus
Analyze
Symbol: FOXJ3
Name: forkhead box J3
RGD ID: 18649040
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN male meiosis I (inferred); positive regulation of transcription by RNA polymerase II (inferred); regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: forkhead box protein J3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,597,016 - 90,746,777 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2090,621,037 - 90,746,784 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603326,160,690 - 26,310,788 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FOXJ3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12090,597,016 - 90,746,777 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2090,621,037 - 90,746,784 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603326,160,690 - 26,310,788 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FOXJ3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38142,176,548 - 42,335,880 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl142,176,539 - 42,335,877 (-)EnsemblGRCh38hg38GRCh38
GRCh37142,642,219 - 42,801,551 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36142,414,797 - 42,573,490 (-)NCBINCBI36Build 36hg18NCBI36
Build 34142,311,303 - 42,469,996NCBI
Celera140,924,186 - 41,082,831 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef140,761,789 - 40,921,534 (-)NCBIHuRef
CHM1_1142,759,333 - 42,918,449 (-)NCBICHM1_1
T2T-CHM13v2.0142,047,196 - 42,206,280 (-)NCBIT2T-CHM13v2.0
Foxj3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394119,396,858 - 119,486,316 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4119,394,201 - 119,486,316 (+)EnsemblGRCm39 Ensembl
GRCm384119,539,661 - 119,629,119 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4119,537,004 - 119,629,119 (+)EnsemblGRCm38mm10GRCm38
MGSCv374119,212,293 - 119,301,724 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364119,037,620 - 119,127,051 (+)NCBIMGSCv36mm8
Celera4118,293,080 - 118,361,897 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map455.43NCBI
Foxj3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85138,425,623 - 138,513,760 (+)NCBIGRCr8
mRatBN7.25133,140,344 - 133,228,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5133,140,884 - 133,228,489 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5135,869,276 - 135,957,126 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05137,625,720 - 137,713,566 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05137,646,321 - 137,734,171 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05138,587,968 - 138,676,948 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5138,605,793 - 138,676,962 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05142,408,836 - 142,478,023 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45140,128,528 - 140,218,617 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15140,138,244 - 140,221,538 (+)NCBI
Celera5131,664,387 - 131,751,888 (+)NCBICelera
Cytogenetic Map5q36NCBI
Foxj3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555371,816,241 - 1,936,380 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555371,816,431 - 1,936,380 (-)NCBIChiLan1.0ChiLan1.0
FOXJ3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21184,476,740 - 184,636,304 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11183,615,251 - 183,778,420 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0141,475,482 - 41,637,478 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1142,855,060 - 43,017,611 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl142,855,058 - 42,992,584 (-)Ensemblpanpan1.1panPan2
FOXJ3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.115941,301 - 1,081,389 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl15941,274 - 1,078,563 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha151,196,546 - 1,338,551 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0151,023,337 - 1,168,946 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl151,023,148 - 1,168,939 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.115932,281 - 1,074,116 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.015993,939 - 1,135,847 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0151,008,907 - 1,150,747 (+)NCBIUU_Cfam_GSD_1.0
Foxj3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505857,830,143 - 57,940,173 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647423,652,398 - 23,764,969 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647423,654,925 - 23,764,965 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXJ3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6168,994,494 - 169,135,040 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16168,994,432 - 169,135,038 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Foxj3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248921,523,475 - 1,641,322 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248921,523,554 - 1,641,330 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 2 59
Low 18 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000017371   ⟹   ENSCSAP00000016852
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2090,621,037 - 90,746,784 (+)Ensembl
RefSeq Acc Id: XM_007979185   ⟹   XP_007977376
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12090,597,016 - 90,746,777 (+)NCBI
Vero_WHO_p1.0NW_02366603326,160,690 - 26,310,788 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007979186   ⟹   XP_007977377
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12090,597,214 - 90,746,777 (+)NCBI
Vero_WHO_p1.0NW_02366603326,161,608 - 26,310,297 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007979187   ⟹   XP_007977378
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12090,608,373 - 90,746,777 (+)NCBI
Vero_WHO_p1.0NW_02366603326,161,468 - 26,299,555 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007979190   ⟹   XP_007977381
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12090,597,033 - 90,746,777 (+)NCBI
Vero_WHO_p1.0NW_02366603326,161,468 - 26,310,788 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037997870   ⟹   XP_037853798
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603326,163,585 - 26,310,748 (-)NCBI
RefSeq Acc Id: XM_037997880   ⟹   XP_037853808
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603326,163,585 - 26,310,748 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007977376   ⟸   XM_007979185
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S7L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007977381   ⟸   XM_007979190
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007977377   ⟸   XM_007979186
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S7L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007977378   ⟸   XM_007979187
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S7L3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000016852   ⟸   ENSCSAT00000017371
RefSeq Acc Id: XP_037853808   ⟸   XM_037997880
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037853798   ⟸   XM_037997870
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001162 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017371.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/TrEMBL
  FOXJ2/3-like UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene FOXJ3 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN J3 UniProtKB/TrEMBL
  PTHR46078 UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/TrEMBL
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A0D9S7L3 ENTREZGENE, UniProtKB/TrEMBL