EPM2AIP1 (EPM2A interacting protein 1) - Rat Genome Database

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Gene: EPM2AIP1 (EPM2A interacting protein 1) Chlorocebus sabaeus
Analyze
Symbol: EPM2AIP1
Name: EPM2A interacting protein 1
RGD ID: 18646068
Description: ENCODES a protein that exhibits identical protein binding (inferred); INVOLVED IN glycogen biosynthetic process (ortholog); positive regulation of glycogen biosynthetic process (ortholog); response to insulin (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); hereditary nonpolyposis colorectal cancer type 2 (ortholog); FOUND IN cytoplasm (inferred); cytoplasmic side of endoplasmic reticulum membrane (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EPM2A-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,418,518 - 2,422,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,418,630 - 2,420,453 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606311,155,386 - 11,162,525 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
EPM2AIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,418,518 - 2,422,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,418,630 - 2,420,453 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606311,155,386 - 11,162,525 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
EPM2AIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38336,985,043 - 36,993,131 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl336,985,043 - 36,993,131 (-)EnsemblGRCh38hg38GRCh38
GRCh37337,026,534 - 37,034,622 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36337,004,233 - 37,009,799 (-)NCBINCBI36Build 36hg18NCBI36
Build 34337,004,232 - 37,009,799NCBI
Celera336,970,125 - 36,977,560 (-)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef336,968,039 - 36,975,475 (-)NCBIHuRef
CHM1_1336,978,987 - 36,986,425 (-)NCBICHM1_1
T2T-CHM13v2.0336,986,417 - 36,994,504 (-)NCBIT2T-CHM13v2.0
Epm2aip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399111,100,913 - 111,108,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9111,100,997 - 111,108,161 (+)EnsemblGRCm39 Ensembl
GRCm389111,271,845 - 111,279,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9111,271,929 - 111,279,093 (+)EnsemblGRCm38mm10GRCm38
MGSCv379111,174,349 - 111,181,597 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369111,116,745 - 111,123,905 (+)NCBIMGSCv36mm8
Celera9110,995,011 - 111,002,246 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map960.92NCBI
Epm2aip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88120,112,265 - 120,119,613 (+)NCBIGRCr8
mRatBN7.28111,233,871 - 111,241,219 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8111,233,826 - 111,241,871 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8116,849,883 - 116,857,233 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08115,049,114 - 115,056,464 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08112,891,938 - 112,899,288 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08119,524,039 - 119,531,387 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8119,524,039 - 119,531,387 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08118,865,643 - 118,872,586 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48115,653,794 - 115,656,867 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18115,673,241 - 115,721,997 (+)NCBI
Celera8110,515,491 - 110,522,839 (+)NCBICelera
Cytogenetic Map8q32NCBI
Epm2aip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554213,888,007 - 3,889,833 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554213,882,486 - 3,889,851 (-)NCBIChiLan1.0ChiLan1.0
EPM2AIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2236,949,834 - 36,955,000 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1336,955,600 - 36,959,764 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0336,894,383 - 36,899,772 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1337,181,452 - 37,189,481 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl337,187,354 - 37,189,177 (-)Ensemblpanpan1.1panPan2
EPM2AIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,880,996 - 6,888,863 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,886,885 - 6,888,711 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha236,920,696 - 6,929,083 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,166,293 - 7,174,683 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,172,187 - 7,174,013 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1236,986,257 - 6,994,111 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0237,128,462 - 7,136,312 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0237,118,608 - 7,126,995 (-)NCBIUU_Cfam_GSD_1.0
Epm2aip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118193,410,275 - 193,417,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647326,548,849 - 26,556,333 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647326,548,847 - 26,556,334 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPM2AIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1321,878,146 - 21,879,972 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11321,877,863 - 21,886,210 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21323,777,539 - 23,782,636 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Epm2aip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478815,108,361 - 15,110,187 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478815,102,663 - 15,110,354 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 35 6 60
Low 1 14
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000018967   ⟹   ENSCSAP00000018396
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl152,418,630 - 2,420,453 (+)Ensembl
RefSeq Acc Id: XM_007971802   ⟹   XP_007969993
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1152,418,518 - 2,422,637 (+)NCBI
Vero_WHO_p1.0NW_02366606311,155,386 - 11,162,525 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037988473   ⟹   XP_037844401
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606311,155,386 - 11,162,525 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007969993 (Get FASTA)   NCBI Sequence Viewer  
  XP_037844401 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018396
  ENSCSAP00000018396.1
Reference Protein Sequences
RefSeq Acc Id: XP_007969993   ⟸   XM_007971802
- UniProtKB: A0A0D9SC07 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018396   ⟸   ENSCSAT00000018967
RefSeq Acc Id: XP_037844401   ⟸   XM_037988473
- UniProtKB: A0A0D9SC07 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018877 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018967.1 UniProtKB/TrEMBL
InterPro EPM2A-int_1 UniProtKB/TrEMBL
  SPIN-DOC_Znf-C2H2 UniProtKB/TrEMBL
KEGG Report csab:103221084 UniProtKB/TrEMBL
NCBI Gene EPM2AIP1 ENTREZGENE
PANTHER EPM2A-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PTHR45913 UniProtKB/TrEMBL
Pfam zf-C2H2_12 UniProtKB/TrEMBL
UniProt A0A0D9SC07 ENTREZGENE, UniProtKB/TrEMBL