SYCP2L (synaptonemal complex protein 2 like) - Rat Genome Database

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Gene: SYCP2L (synaptonemal complex protein 2 like) Chlorocebus sabaeus
Analyze
Symbol: SYCP2L
Name: synaptonemal complex protein 2 like
RGD ID: 18645282
Description: INVOLVED IN negative regulation of programmed cell death (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog); female germ cell nucleus (ortholog); lateral element (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synaptonemal complex protein 2-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11761,166,225 - 61,244,576 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604410,924,953 - 11,000,623 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
SYCP2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11761,166,225 - 61,244,576 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604410,924,953 - 11,000,623 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SYCP2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38610,887,052 - 10,974,309 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl610,886,831 - 10,979,320 (+)EnsemblGRCh38hg38GRCh38
GRCh37610,887,285 - 10,974,542 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36610,995,050 - 11,082,528 (+)NCBINCBI36Build 36hg18NCBI36
Celera612,115,512 - 12,202,979 (+)NCBICelera
Cytogenetic Map6p24.2NCBI
HuRef610,762,853 - 10,906,303 (+)NCBIHuRef
CHM1_1610,889,155 - 10,976,634 (+)NCBICHM1_1
T2T-CHM13v2.0610,754,685 - 10,841,961 (+)NCBIT2T-CHM13v2.0
Sycp2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391341,267,895 - 41,327,827 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1341,267,783 - 41,327,827 (+)EnsemblGRCm39 Ensembl
GRCm381341,114,419 - 41,174,351 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1341,114,307 - 41,174,351 (+)EnsemblGRCm38mm10GRCm38
MGSCv371341,224,806 - 41,269,720 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361341,212,080 - 41,273,683 (+)NCBIMGSCv36mm8
Celera1342,207,007 - 42,245,168 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1320.32NCBI
Sycp2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81723,798,424 - 23,851,017 (-)NCBIGRCr8
mRatBN7.21723,589,217 - 23,645,273 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1723,592,899 - 23,648,306 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01721,430,470 - 21,486,091 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1721,430,337 - 21,484,456 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01723,410,100 - 23,468,644 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41729,536,991 - 29,598,175 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1723,264,191 - 23,319,515 (-)NCBICelera
Cytogenetic Map17p12NCBI
Sycp2l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554653,440,106 - 3,518,840 (-)NCBIChiLan1.0ChiLan1.0
SYCP2L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2525,419,642 - 25,623,381 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1621,409,326 - 21,613,566 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0610,611,051 - 10,834,913 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1610,867,834 - 11,111,969 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl610,867,833 - 10,879,787 (+)Ensemblpanpan1.1panPan2
SYCP2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13510,568,191 - 10,678,633 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3510,575,849 - 10,664,032 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3510,526,112 - 10,627,792 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03510,681,166 - 10,780,930 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13510,501,597 - 10,611,681 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03510,557,122 - 10,659,960 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03511,878,598 - 11,981,589 (+)NCBIUU_Cfam_GSD_1.0
Sycp2l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494613,755,355 - 13,876,426 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365342,024,341 - 2,131,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYCP2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl77,574,372 - 7,640,989 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.177,574,153 - 7,647,874 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.277,929,073 - 7,973,128 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sycp2l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475614,996,868 - 15,084,285 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475614,999,209 - 15,084,967 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007973696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_007973696   ⟹   XP_007971887
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11761,166,225 - 61,244,576 (-)NCBI
Vero_WHO_p1.0NW_02366604410,924,953 - 11,000,623 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007971887 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007971887   ⟸   XM_007973696


Additional Information

Database Acc Id Source(s)
NCBI Gene SYCP2L ENTREZGENE