KIF7 (kinesin family member 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: KIF7 (kinesin family member 7) Chlorocebus sabaeus
Analyze
Symbol: KIF7
Name: kinesin family member 7
RGD ID: 18643655
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN aorta development (ortholog); cardiac septum development (ortholog); coronary vasculature development (ortholog); ASSOCIATED WITH acrocallosal syndrome (ortholog); Bloom syndrome (ortholog); cerebellar ataxia (ortholog); FOUND IN ciliary basal body (ortholog); ciliary tip (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,172,294 - 8,193,775 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl298,170,883 - 8,191,323 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605938,619,706 - 38,641,263 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
KIF7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1298,172,294 - 8,193,775 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl298,170,883 - 8,191,323 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605938,619,706 - 38,641,263 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KIF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,617,309 - 89,663,049 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,608,789 - 89,663,086 (-)EnsemblGRCh38hg38GRCh38
GRCh371590,171,208 - 90,198,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361587,972,211 - 87,992,578 (-)NCBINCBI36Build 36hg18NCBI36
Build 341587,972,210 - 87,992,578NCBI
Celera1566,573,786 - 66,601,377 (-)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,284,310 - 66,311,684 (-)NCBIHuRef
CHM1_11590,012,172 - 90,039,692 (-)NCBICHM1_1
T2T-CHM13v2.01587,372,080 - 87,419,012 (-)NCBIT2T-CHM13v2.0
Kif7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,347,846 - 79,365,520 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,347,846 - 79,365,468 (-)EnsemblGRCm39 Ensembl
GRCm38779,698,098 - 79,715,772 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,698,098 - 79,715,720 (-)EnsemblGRCm38mm10GRCm38
MGSCv37786,842,984 - 86,859,072 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36775,564,956 - 75,583,638 (-)NCBIMGSCv36mm8
Celera777,096,856 - 77,112,945 (-)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.09NCBI
Kif7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,041,206 - 143,067,873 (-)NCBIGRCr8
mRatBN7.21133,639,487 - 133,658,539 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,640,065 - 133,658,576 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01141,434,183 - 141,452,592 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,434,625 - 141,451,075 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01142,395,121 - 142,413,510 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41135,472,621 - 135,489,513 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11135,550,432 - 135,569,402 (-)NCBI
Celera1125,703,693 - 125,721,866 (-)NCBICelera
Cytogenetic Map1q31NCBI
Kif7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,555,933 - 15,570,985 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541615,555,959 - 15,570,925 (+)NCBIChiLan1.0ChiLan1.0
KIF7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21679,167,497 - 79,206,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11582,871,295 - 82,910,176 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01568,312,064 - 68,349,864 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11587,528,828 - 87,555,931 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1587,529,290 - 87,553,445 (-)Ensemblpanpan1.1panPan2
KIF7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,630,059 - 52,649,164 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,630,494 - 52,649,231 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha355,264,128 - 55,283,207 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0353,046,500 - 53,065,607 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,046,492 - 53,065,700 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,568,589 - 52,587,659 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,778,634 - 52,797,720 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,118,767 - 53,137,856 (-)NCBIUU_Cfam_GSD_1.0
Kif7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640130,883,516 - 130,903,801 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,431,470 - 15,449,067 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648315,430,735 - 15,450,872 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,200,594 - 55,220,240 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1755,200,591 - 55,220,237 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,093,446 - 60,109,975 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Kif7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476816,718,978 - 16,730,707 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476816,674,485 - 16,732,698 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 16 25
Low 20 18 35
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015245   ⟹   ENSCSAP00000013190
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl298,170,883 - 8,191,323 (-)Ensembl
RefSeq Acc Id: XM_007990356   ⟹   XP_007988547
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1298,172,294 - 8,193,775 (-)NCBI
Vero_WHO_p1.0NW_02366605938,619,706 - 38,641,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007990357   ⟹   XP_007988548
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1298,172,519 - 8,193,374 (-)NCBI
Vero_WHO_p1.0NW_02366605938,620,051 - 38,641,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007990358   ⟹   XP_007988549
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1298,172,519 - 8,193,775 (-)NCBI
Vero_WHO_p1.0NW_02366605938,619,706 - 38,641,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007990360   ⟹   XP_007988551
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1298,172,519 - 8,193,775 (-)NCBI
Vero_WHO_p1.0NW_02366605938,619,706 - 38,641,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007990361   ⟹   XP_007988552
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1298,172,519 - 8,193,775 (-)NCBI
Vero_WHO_p1.0NW_02366605938,619,706 - 38,641,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037987700   ⟹   XP_037843628
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605938,619,706 - 38,641,263 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007988547   ⟸   XM_007990356
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RX51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007988552   ⟸   XM_007990361
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RX51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007988551   ⟸   XM_007990360
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RX51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007988549   ⟸   XM_007990358
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RX51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007988548   ⟸   XM_007990357
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RX51 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000013190   ⟸   ENSCSAT00000015245
RefSeq Acc Id: XP_037843628   ⟸   XM_037987700
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RX51 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017151 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015245.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report csab:103231155 UniProtKB/TrEMBL
NCBI Gene KIF7 ENTREZGENE
PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED UniProtKB/TrEMBL
  KINESIN FAMILY MEMBER 7 UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9RX51 ENTREZGENE, UniProtKB/TrEMBL