CLIC6 (chloride intracellular channel 6) - Rat Genome Database

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Gene: CLIC6 (chloride intracellular channel 6) Chlorocebus sabaeus
Analyze
Symbol: CLIC6
Name: chloride intracellular channel 6
RGD ID: 18643615
Description: ENCODES a protein that exhibits chloride channel activity (ortholog); D2 dopamine receptor binding (ortholog); D3 dopamine receptor binding (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); Familial Platelet Disorder with Associated Myeloid Malignancy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chloride intracellular channel protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,703,815 - 78,752,183 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660546,522,713 - 6,569,852 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CLIC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1278,703,815 - 78,752,183 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660546,522,713 - 6,569,852 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CLIC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382134,668,994 - 34,718,223 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2134,668,994 - 34,718,227 (+)EnsemblGRCh38hg38GRCh38
GRCh372136,041,293 - 36,090,521 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362134,963,558 - 35,012,389 (+)NCBINCBI36Build 36hg18NCBI36
Build 342134,963,557 - 35,012,389NCBI
Celera2121,241,258 - 21,290,092 (+)NCBICelera
Cytogenetic Map21q22.12NCBI
HuRef2121,520,561 - 21,569,502 (+)NCBIHuRef
CHM1_12135,603,984 - 35,652,808 (+)NCBICHM1_1
T2T-CHM13v2.02133,051,578 - 33,100,790 (+)NCBIT2T-CHM13v2.0
Clic6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391692,295,035 - 92,338,129 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1692,282,624 - 92,338,131 (+)EnsemblGRCm39 Ensembl
GRCm381692,498,147 - 92,541,241 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1692,485,736 - 92,541,243 (+)EnsemblGRCm38mm10GRCm38
MGSCv371692,498,392 - 92,541,486 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361692,387,006 - 92,430,100 (+)NCBIMGSCv36mm8
Celera1693,581,042 - 93,624,278 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1653.64NCBI
Clic6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81145,223,715 - 45,266,261 (+)NCBIGRCr8
mRatBN7.21131,737,813 - 31,780,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1131,737,813 - 31,780,061 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1140,432,325 - 40,474,994 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01133,103,806 - 33,146,473 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01132,262,687 - 32,305,152 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01132,655,653 - 32,698,004 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1132,655,616 - 32,699,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01136,259,974 - 36,302,131 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41132,516,492 - 32,559,195 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11132,572,734 - 32,615,438 (+)NCBI
Celera1131,389,140 - 31,431,254 (+)NCBICelera
Cytogenetic Map11q11NCBI
Clic6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540734,002,656 - 34,042,524 (+)NCBIChiLan1.0ChiLan1.0
CLIC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22230,792,009 - 30,841,205 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12125,650,076 - 25,698,983 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02121,041,763 - 21,089,958 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12134,409,056 - 34,457,307 (+)NCBIpanpan1.1PanPan1.1panPan2
CLIC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13130,003,448 - 30,102,939 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3130,091,335 - 30,100,842 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3129,156,624 - 29,202,157 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03129,303,623 - 29,403,853 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3129,358,233 - 29,403,507 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13129,224,227 - 29,269,813 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03129,238,956 - 29,284,553 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03129,675,108 - 29,775,259 (+)NCBIUU_Cfam_GSD_1.0
Clic6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497129,651,093 - 29,693,204 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365007,774,597 - 7,816,702 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365007,774,962 - 7,816,658 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLIC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13198,251,119 - 198,303,857 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113198,250,702 - 198,303,830 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213208,079,952 - 208,131,097 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Clic6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474522,816,292 - 22,861,613 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474522,807,618 - 22,861,521 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_007967299   ⟹   XP_007965490
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1278,703,815 - 78,752,183 (+)NCBI
Vero_WHO_p1.0NW_0236660546,522,713 - 6,569,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037984765   ⟹   XP_037840693
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660546,522,713 - 6,569,852 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007965490 (Get FASTA)   NCBI Sequence Viewer  
  XP_037840693 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007965490   ⟸   XM_007967299
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037840693   ⟸   XM_037984765
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene CLIC6 ENTREZGENE