TRABD (TraB domain containing) - Rat Genome Database

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Gene: TRABD (TraB domain containing) Chlorocebus sabaeus
Analyze
Symbol: TRABD
Name: TraB domain containing
RGD ID: 18639158
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: traB domain-containing protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,677,292 - 32,691,565 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,684,603 - 32,692,742 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,664,364 - 92,680,053 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
TRABD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,677,292 - 32,691,565 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,684,603 - 32,692,742 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604592,664,364 - 92,680,053 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TRABD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,185,913 - 50,199,595 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,185,913 - 50,199,598 (+)EnsemblGRCh38hg38GRCh38
GRCh372250,624,342 - 50,638,024 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362248,966,487 - 48,980,154 (+)NCBINCBI36Build 36hg18NCBI36
Celera2234,499,271 - 34,512,938 (+)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,529,129 - 33,535,748 (+)NCBIHuRef
CHM1_12250,583,130 - 50,596,766 (+)NCBICHM1_1
T2T-CHM13v2.02250,692,650 - 50,706,355 (+)NCBIT2T-CHM13v2.0
Trabd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391588,960,267 - 88,971,278 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1588,959,327 - 88,971,280 (+)EnsemblGRCm39 Ensembl
GRCm381589,076,064 - 89,087,075 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,075,124 - 89,087,077 (+)EnsemblGRCm38mm10GRCm38
MGSCv371588,906,494 - 88,917,505 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,903,837 - 88,914,836 (+)NCBIMGSCv36mm8
Celera1591,203,972 - 91,214,983 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.59NCBI
Trabd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,034,685 - 122,045,657 (+)NCBIGRCr8
mRatBN7.27120,155,042 - 120,166,015 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,155,042 - 120,166,015 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,905,976 - 121,916,935 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,132,141 - 124,143,100 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,095,252 - 124,106,118 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,058,252 - 130,069,224 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,058,252 - 130,069,224 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,744,197 - 129,755,170 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,379,630 - 127,390,602 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,413,876 - 127,424,828 (+)NCBI
Celera7116,628,986 - 116,639,966 (+)NCBICelera
Cytogenetic Map7q34NCBI
Trabd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,221,807 - 33,237,274 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,229,796 - 33,233,686 (+)NCBIChiLan1.0ChiLan1.0
TRABD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,090,786 - 60,104,803 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,777,186 - 62,791,177 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,413,948 - 30,427,935 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,419,255 - 49,428,530 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,421,306 - 49,428,530 (+)Ensemblpanpan1.1panPan2
TRABD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11017,043,710 - 17,045,935 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1017,043,767 - 17,046,068 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1017,020,630 - 17,028,193 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,769,668 - 17,777,243 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,769,668 - 17,777,340 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,493,719 - 17,501,294 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,816,749 - 17,824,316 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,948,986 - 17,956,561 (-)NCBIUU_Cfam_GSD_1.0
Trabd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945604,483 - 613,428 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629604,339 - 610,454 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629604,483 - 610,441 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRABD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5485,475 - 494,534 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15485,464 - 494,574 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,708,324 - 110,717,511 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Trabd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752554,471 - 561,692 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752554,444 - 562,021 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 1 30
Low 19 30
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000003065   ⟹   ENSCSAP00000001355
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1932,684,603 - 32,692,742 (+)Ensembl
RefSeq Acc Id: XM_007976186   ⟹   XP_007974377
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11932,677,292 - 32,691,565 (+)NCBI
Vero_WHO_p1.0NW_02366604592,665,250 - 92,678,637 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007976188   ⟹   XP_007974379
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11932,677,292 - 32,691,565 (+)NCBI
Vero_WHO_p1.0NW_02366604592,665,250 - 92,678,641 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007976189   ⟹   XP_007974380
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11932,677,352 - 32,691,565 (+)NCBI
Vero_WHO_p1.0NW_02366604592,665,250 - 92,678,703 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007976190   ⟹   XP_007974381
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11932,677,330 - 32,691,565 (+)NCBI
Vero_WHO_p1.0NW_02366604592,665,250 - 92,678,709 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007976191   ⟹   XP_007974382
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11932,681,409 - 32,691,565 (+)NCBI
Vero_WHO_p1.0NW_02366604592,665,250 - 92,673,764 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038007274   ⟹   XP_037863202
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,664,364 - 92,678,637 (-)NCBI
RefSeq Acc Id: XM_038007275   ⟹   XP_037863203
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,665,250 - 92,678,657 (-)NCBI
RefSeq Acc Id: XM_038007277   ⟹   XP_037863205
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,665,250 - 92,678,703 (-)NCBI
RefSeq Acc Id: XM_038007278   ⟹   XP_037863206
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,665,250 - 92,678,709 (-)NCBI
RefSeq Acc Id: XM_038007279   ⟹   XP_037863207
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,665,250 - 92,675,959 (-)NCBI
RefSeq Acc Id: XM_038007280   ⟹   XP_037863208
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,665,250 - 92,673,562 (-)NCBI
RefSeq Acc Id: XM_038007281   ⟹   XP_037863209
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,665,250 - 92,680,053 (-)NCBI
RefSeq Acc Id: XP_007974377   ⟸   XM_007976186
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QYB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974379   ⟸   XM_007976188
- Peptide Label: isoform X4
RefSeq Acc Id: XP_007974381   ⟸   XM_007976190
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QYB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974380   ⟸   XM_007976189
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QYB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007974382   ⟸   XM_007976191
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QYB6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000001355   ⟸   ENSCSAT00000003065
RefSeq Acc Id: XP_037863202   ⟸   XM_038007274
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037863209   ⟸   XM_038007281
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037863206   ⟸   XM_038007278
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037863205   ⟸   XM_038007277
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037863203   ⟸   XM_038007275
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037863207   ⟸   XM_038007279
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037863208   ⟸   XM_038007280
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005032 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003065.1 UniProtKB/TrEMBL
InterPro TraB_fam UniProtKB/TrEMBL
  TraB_PrgY-like UniProtKB/TrEMBL
NCBI Gene TRABD ENTREZGENE
PANTHER PTHR21530 UniProtKB/TrEMBL
  TRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam TraB UniProtKB/TrEMBL
UniProt A0A0D9QYB6 ENTREZGENE, UniProtKB/TrEMBL