PCBP4 (poly(rC) binding protein 4)

Gene: PCBP4 (poly(rC) binding protein 4) Chlorocebus sabaeus

Analyze

Symbol:

PCBP4

Name:

poly(rC) binding protein 4

RGD ID:

18635002

Description:

ENCODES a protein that exhibits mRNA 3'-UTR binding (inferred); mRNA binding (inferred); nucleic acid binding (inferred); INVOLVED IN DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); negative regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (ortholog); PARTICIPATES IN iron homeostasis pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

poly(rC)-binding protein 4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	13,326,069 - 13,336,474 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	13,325,551 - 13,329,903 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	153,570,710 - 153,609,107 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest (ISO)

intrinsic apoptotic signaling pathway in response to DNA damage (ISO)

negative regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator (ISO)

negative regulation of mRNA splicing, via spliceosome (IEA,ISO)

regulation of cell cycle (ISO)

regulation of mRNA stability (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nucleus (IEA)

Molecular Function

mRNA 3'-UTR binding (IEA)

mRNA binding (IEA)

nucleic acid binding (IEA)

RNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

iron homeostasis pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

PCBP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	13,326,069 - 13,336,474 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	13,325,551 - 13,329,903 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	153,570,710 - 153,609,107 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

PCBP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	51,957,454 - 51,967,466 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	51,957,454 - 51,974,016 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	51,991,470 - 52,001,482 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	51,966,514 - 51,976,509 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	51,966,513 - 51,971,948	NCBI
Celera	3	51,970,297 - 51,980,309 (-)	NCBI		Celera
Cytogenetic Map	3	p21.2	NCBI
HuRef	3	52,054,808 - 52,064,820 (-)	NCBI		HuRef
CHM1_1	3	51,944,157 - 51,954,169 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	51,990,373 - 52,000,385 (-)	NCBI		T2T-CHM13v2.0

Pcbp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	106,330,181 - 106,341,211 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	106,330,490 - 106,341,211 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	106,452,982 - 106,464,012 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	106,453,291 - 106,464,012 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	106,356,188 - 106,366,343 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	106,311,991 - 106,322,108 (+)	NCBI		MGSCv36	mm8
Celera	9	106,080,920 - 106,090,913 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	57.54	NCBI

Pcbp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	115,971,751 - 115,981,987 (+)	NCBI		GRCr8
mRatBN7.2	8	107,092,688 - 107,103,276 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	107,093,013 - 107,103,276 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	112,716,011 - 112,726,243 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	110,915,187 - 110,925,419 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	108,757,969 - 108,768,201 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	115,154,848 - 115,165,706 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	115,155,470 - 115,165,706 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	114,518,974 - 114,529,993 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	111,597,539 - 111,607,775 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	111,617,020 - 111,627,230 (+)	NCBI
Celera	8	106,404,965 - 106,415,187 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Pcbp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	3,603,975 - 3,614,290 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	3,604,720 - 3,615,112 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCBP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	51,951,805 - 51,961,801 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	51,956,571 - 51,966,603 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	51,898,857 - 51,908,932 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	53,127,448 - 53,137,292 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	53,127,448 - 53,137,293 (-)	Ensembl	panpan1.1		panPan2

PCBP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	37,748,854 - 37,759,072 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	37,748,938 - 37,759,073 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	37,730,280 - 37,740,519 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	38,099,394 - 38,109,634 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	38,099,389 - 38,109,631 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	37,462,996 - 37,473,239 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	37,871,760 - 37,881,997 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	38,156,623 - 38,166,864 (+)	NCBI		UU_Cfam_GSD_1.0

Pcbp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	66,543,674 - 66,547,936 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	3,300,712 - 3,308,288 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	3,304,171 - 3,308,422 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCBP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	34,090,020 - 34,099,886 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	34,090,015 - 34,099,959 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	37,286,561 - 37,296,491 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Pcbp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	5,775,805 - 5,788,195 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	5,776,777 - 5,786,782 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36		60
Low		20
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007984435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007984436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007984437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007984438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007984439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038003856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038003857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038003859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038003860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000012009 ⟹ ENSCSAP00000010062

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	22	13,325,551 - 13,329,903 (-)	Ensembl

RefSeq Acc Id:

XM_007984435 ⟹ XP_007982626

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	13,326,069 - 13,336,473 (-)	NCBI
Vero_WHO_p1.0	NW_023666041	153,570,710 - 153,609,107 (+)	NCBI

Sequence:

show sequence

GCCGGGGGGGGGGGGGGGGGCGCGGAGCCGGGCTCCGGGCCGGCCGGGCTCCGCGCCTGTCAAA
CCCCTCATTGTTCGCAGCTGATGTCACTCGCAGTTGTGAGCGGCCGCCTCTCCCGGGGACAATG
TGGGACTGAGCGGCCCAGCCTCCGTGCCGCCGCCGCCGCCGCCGCAGGACAGCCCCAGCGAGAG
CCGGCCAGGTCGCAGCGTGGACACACTTGCAGGTCGCTGTGGCCCCAGCCTCGCCTGACAGAAT
GAGCGGCTCGGATGGGGGACTGGAGGAGGAGCCAGAGCTCAGCATCACCCTCACGCTGCGGATG
CTGATGCATGGGAAGGAAGTGGGCAGCATCATCGGGAAGAAGGGCGAGACTGTAAAGCGAATCC
GGGAGCAGAGCAGTGCCCGGATCACCATCTCCGAGGGCTCCTGCCCCGAACGCATCACCACCAT
CACCGGGTCTACAGCGGCTGTCTTCCATGCAGTCTCCATGATTGCTTTCAAACTGGATGAGGAC
CTTTGTGCTGCTCCTGCAAATGGTGGAAATGTCTCCAGGCCTCCAGTGACCCTGCGCCTTGTCA
TCCCTGCCAGTCAGTGTGGCTCACTGATTGGGAAGGCTGGCACCAAGATCAAGGAGATCCGAGA
GACTACAGGTGCCCAGGTACAGGTGGCAGGGGACCTGCTCCCCAACTCCACAGAACGAGCTGTT
ACCGTGTCTGGGGTGCCTGATGCCATCATCCTGTGTGTGCGCCAGATCTGCGCTGTTATCCTGG
AGTCCCCACCCAAAGGAGCCACTATCCCGTACCATCCGAGCCTCTCCCTAGGTACTGTCCTTCT
CTCTGCCAACCAGGGCTTCTCTGTCCAGGGTCAGTATGGGGCTGTTACCCCAGCTGAGGTCACC
AAGCTCCAGCAGCTCTCAAGCCATGCAGTCCCCTTTGCCACACCCAGTGTGGTGCCAGGACTGG
ATCCCGGCACACAGACCAGCTCACAGGAGTTCTTGGTTCCCAACGATCTGATTGGCTGTGTGAT
CGGGCGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGATGTCAGGGGCACACATCAAGATCGGG
AACCAAGCAGAGGGCGCTGGGGAGCGGCATGTCACCATCACTGGCTCTCCGGTCTCCATCGCCC
TGGCCCAGTACCTCATCACTGCCTGTCTAGAGACGGCCAAGTCTACCTCTGGGGGGACGCCCGG
CTCGGCCCCCGCAGACCTGCCTGCCCCCTTCTCGCCACCCCTGACGGCCCTGCCCACAGCTCCC
CCAGGCCTGCTGGGCACACCCTATGCCATCTCCCTCTCCAACTTCATCGGCCTCAAGCCTGTGC
CCTTCTTGGCTCTACCACCTGCTTCCCCAGGGCCGCCGCCGGGCTTGGCGGCCTACACTGCCAA
GATGGCAGCGGCTAATGGGAGCAAGAAGGCTGAGCGGCAGAAATTCTCCCCCTACTGAGGCCAG
CTGAGGTACAGGCAGGGGCAGGCAGGACCACCAGCAGGGGGCTGCCTCCGCACCCTGCCCGCCC
AAGGAGACTCCACCCTGGGGTCCTAAACGCCGCTAACGCCCAGACGCATGGATGCACCCCCTAC
CCTGCCTCCGTCTATGGGAGTTCCTTCTCTCAGAGTGGGGGCAGTTTCTGGCCCAGGGGTCTGA
GCTGCGGCAGCCCCAGAGCAGGGGGCGTACCTCTTCAGCTCTGTGCTTGGATACAGGGAGCAGC
CAGGAGACTCCCTAGTGCCCCCACCATGGGGGGTGTCACTCACACACTCCCCATCCCTTAGGGC
TTCCTGGCCTACTGCATCCTTTTGGGAGTCAGGGAGGAGGGCCCAGGGGGGTAGCTGGGGCCAG
GCTTCTCTCCCCACCACCTGCAGATTTCTTGCTGCTTCCACTGATACCCTTTTGACTGGAATGA
ACTGGCTGGGCTTGTCAGGGGGCACCCTAAAGAGGGGGCACTGCCAGGTAGCTGGGGGAGTGGC
ATGGGGCAGGGGCCCAGTTCTCAGCAGCAGACACTCTGTACAGTTTTTTCAATCCCTGTTTTTG
AATAAATATTCTCAGCGACCAGGAA

hide sequence

RefSeq Acc Id:

XM_007984437 ⟹ XP_007982628

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	13,326,069 - 13,331,726 (-)	NCBI
Vero_WHO_p1.0	NW_023666041	153,600,487 - 153,609,107 (+)	NCBI

Sequence:

show sequence

AGGCAGCAGCCTTGGCTCCTGCTCCAAGGGGCTCCTGGGCTTGGCTGTCCAGAGAGGCAGAAAC
CAAGCACGTCATCACAAGTGCTTTGATGGGGGAAGTGCAGGCAGCTGGGGGAATGTCTAGCAAG
GGCAGCCAGCATGAGGCTGGCCAGGATGCTCGGAGAGCACAGTCCCTGCATCCACTGCTCATCT
CCACCCTCTGGAGTCCCTATGGCAGAACTCAAATAGAAGGAGGAGCAGCTGCGCCCAGGGGAGC
AGGGTGTCACCTCCGTTGGATAGAGCCGGCCAGGTCGCAGCGTGGACACACTTGCAGGTCGCTG
TGGCCCCAGCCTCGCCTGACAGAATGAGCGGCTCGGATGGGGGACTGGAGGAGGAGCCAGAGCT
CAGCATCACCCTCACGCTGCGGATGCTGATGCATGGGAAGGAAGTGGGCAGCATCATCGGGAAG
AAGGGCGAGACTGTAAAGCGAATCCGGGAGCAGAGCAGTGCCCGGATCACCATCTCCGAGGGCT
CCTGCCCCGAACGCATCACCACCATCACCGGGTCTACAGCGGCTGTCTTCCATGCAGTCTCCAT
GATTGCTTTCAAACTGGATGAGGACCTTTGTGCTGCTCCTGCAAATGGTGGAAATGTCTCCAGG
CCTCCAGTGACCCTGCGCCTTGTCATCCCTGCCAGTCAGTGTGGCTCACTGATTGGGAAGGCTG
GCACCAAGATCAAGGAGATCCGAGAGACTACAGGTGCCCAGGTACAGGTGGCAGGGGACCTGCT
CCCCAACTCCACAGAACGAGCTGTTACCGTGTCTGGGGTGCCTGATGCCATCATCCTGTGTGTG
CGCCAGATCTGCGCTGTTATCCTGGAGTCCCCACCCAAAGGAGCCACTATCCCGTACCATCCGA
GCCTCTCCCTAGGTACTGTCCTTCTCTCTGCCAACCAGGGCTTCTCTGTCCAGGGTCAGTATGG
GGCTGTTACCCCAGCTGAGGTCACCAAGCTCCAGCAGCTCTCAAGCCATGCAGTCCCCTTTGCC
ACACCCAGTGTGGTGCCAGGACTGGATCCCGGCACACAGACCAGCTCACAGGAGTTCTTGGTTC
CCAACGATCTGATTGGCTGTGTGATCGGGCGCCAGGGCAGCAAGATCAGCGAGATCCGGCAGAT
GTCAGGGGCACACATCAAGATCGGGAACCAAGCAGAGGGCGCTGGGGAGCGGCATGTCACCATC
ACTGGCTCTCCGGTCTCCATCGCCCTGGCCCAGTACCTCATCACTGCCTGTCTAGAGACGGCCA
AGTCTACCTCTGGGGGGACGCCCGGCTCGGCCCCCGCAGACCTGCCTGCCCCCTTCTCGCCACC
CCTGACGGCCCTGCCCACAGCTCCCCCAGGCCTGCTGGGCACACCCTATGCCATCTCCCTCTCC
AACTTCATCGGCCTCAAGCCTGTGCCCTTCTTGGCTCTACCACCTGCTTCCCCAGGGCCGCCGC
CGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCTAATGGGAGCAAGAAGGCTGAGCGGCA
GAAATTCTCCCCCTACTGAGGCCAGCTGAGGTACAGGCAGGGGCAGGCAGGACCACCAGCAGGG
GGCTGCCTCCGCACCCTGCCCGCCCAAGGAGACTCCACCCTGGGGTCCTAAACGCCGCTAACGC
CCAGACGCATGGATGCACCCCCTACCCTGCCTCCGTCTATGGGAGTTCCTTCTCTCAGAGTGGG
GGCAGTTTCTGGCCCAGGGGTCTGAGCTGCGGCAGCCCCAGAGCAGGGGGCGTACCTCTTCAGC
TCTGTGCTTGGATACAGGGAGCAGCCAGGAGACTCCCTAGTGCCCCCACCATGGGGGGTGTCAC
TCACACACTCCCCATCCCTTAGGGCTTCCTGGCCTACTGCATCCTTTTGGGAGTCAGGGAGGAG
GGCCCAGGGGGGTAGCTGGGGCCAGGCTTCTCTCCCCACCACCTGCAGATTTCTTGCTGCTTCC
ACTGATACCCTTTTGACTGGAATGAACTGGCTGGGCTTGTCAGGGGGCACCCTAAAGAGGGGGC
ACTGCCAGGTAGCTGGGGGAGTGGCATGGGGCAGGGGCCCAGTTCTCAGCAGCAGACACTCTGT
ACAGTTTTTTCAATCCCTGTTTTTGAATAAATATTCTCAGCGACCAGGAA

hide sequence

RefSeq Acc Id:

XM_007984438 ⟹ XP_007982629

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	22	13,326,167 - 13,336,473 (-)	NCBI
Vero_WHO_p1.0	NW_023666041	153,570,710 - 153,609,107 (+)	NCBI

Sequence:

show sequence

GCCGGGGGGGGGGGGGGGGGCGCGGAGCCGGGCTCCGGGCCGGCCGGGCTCCGCGCCTGTCAAA
CCCCTCATTGTTCGCAGCTGATGTCACTCGCAGTTGTGAGCGGCCGCCTCTCCCGGGGACAATG
TGGGACTGAGCGGCCCAGCCTCCGTGCCGCCGCCGCCGCCGCCGCAGGACAGCCCCAGCGAGGT
CGCTGTGGCCCCAGCCTCGCCTGACAGAATGAGCGGCTCGGATGGGGGACTGGAGGAGGAGCCA
GAGCTCAGCATCACCCTCACGCTGCGGATGCTGATGCATGGGAAGGAAGTGGGCAGCATCATCG
GGAAGAAGGGCGAGACTGTAAAGCGAATCCGGGAGCAGAGCAGTGCCCGGATCACCATCTCCGA
GGGCTCCTGCCCCGAACGCATCACCACCATCACCGGGTCTACAGCGGCTGTCTTCCATGCAGTC
TCCATGATTGCTTTCAAACTGGATGAGGACCTTTGTGCTGCTCCTGCAAATGGTGGAAATGTCT
CCAGGCCTCCAGTGACCCTGCGCCTTGTCATCCCTGCCAGTCAGTGTGGCTCACTGATTGGGAA
GGCTGGCACCAAGATCAAGGAGATCCGAGAGACTACAGGTGCCCAGGTACAGGTGGCAGGGGAC
CTGCTCCCCAACTCCACAGAACGAGCTGTTACCGTGTCTGGGGTGCCTGATGCCATCATCCTGT
GTGTGCGCCAGATCTGCGCTGTTATCCTGGAGTCCCCACCCAAAGGAGCCACTATCCCGTACCA
TCCGAGCCTCTCCCTAGGTACTGTCCTTCTCTCTGCCAACCAGGGCTTCTCTGTCCAGGGTCAG
TATGGGGCTGTTACCCCAGCTGAGGTCACCAAGCTCCAGCAGCTCTCAAGCCATGCAGTCCCCT
TTGCCACACCCAGTGTGGTGCCAGGACTGGATCCCGGCACACAGACCAGCTCACAGGAGTTCTT
GGTTCCCAACGATCTGATTGGCTGTGTGATCGGGCGCCAGGGCAGCAAGATCAGCGAGATCCGG
CAGATGTCAGGGGCACACATCAAGATCGGGAACCAAGCAGAGGGCGCTGGGGAGCGGCATGTCA
CCATCACTGGCTCTCCGGTCTCCATCGCCCTGGCCCAGTACCTCATCACTGCCTGTCTAGAGAC
GGCCAAGTCTACCTCTGGGGGGACGCCCGGCTCGGCCCCCGCAGACCTGCCTGCCCCCTTCTCG
CCACCCCTGACGGCCCTGCCCACAGCTCCCCCAGGCCTGCTGGGCACACCCTATGCCATCTCCC
TCTCCAACTTCATCGGCCTCAAGCCTGTGCCCTTCTTGGCTCTACCACCTGCTTCCCCAGGGCC
GCCGCCGGGCTTGGCGGCCTACACTGCCAAGATGGCAGCGGCTAATGGGAGCAAGAAGGCTGAG
CGGCAGAAATTCTCCCCCTACTGAGGCCAGCTGAGGTACAGGCAGGGGCAGGCAGGACCACCAG
CAGGGGGCTGCCTCCGCACCCTGCCCGCCCAAGGAGACTCCACCCTGGGGTCCTAAACGCCGCT
AACGCCCAGACGCATGGATGCACCCCCTACCCTGCCTCCGTCTATGGGAGTTCCTTCTCTCAGA
GTGGGGGCAGTTTCTGGCCCAGGGGTCTGAGCTGCGGCAGCCCCAGAGCAGGGGGCGTACCTCT
TCAGCTCTGTGCTTGGATACAGGGAGCAGCCAGGAGACTCCCTAGTGCCCCCACCATGGGGGGT
GTCACTCACACACTCCCCATCCCTTAGGGCTTCCTGGCCTACTGCATCCTTTTGGGAGTCAGGG
AGGAGGGCCCAGGGGGGTAGCTGGGGCCAGGCTTCTCTCCCCACCACCTGCAGATTTCTTGCTG
CTTCCACTGATACCCTTTTGACTGGAATGAACTGGCTGGGCTTGTCAGGGGGCACCCTAAAGAG
GGGGCACTGCCAGGTAGCTGG

hide sequence

RefSeq Acc Id:

XM_038003856 ⟹ XP_037859784

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666041	153,603,766 - 153,609,107 (+)	NCBI

RefSeq Acc Id:

XM_038003857 ⟹ XP_037859785

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666041	153,603,766 - 153,609,107 (+)	NCBI

RefSeq Acc Id:

XM_038003859 ⟹ XP_037859787

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666041	153,598,626 - 153,609,107 (+)	NCBI

RefSeq Acc Id:

XM_038003860 ⟹ XP_037859788

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666041	153,603,767 - 153,609,107 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007982626	(Get FASTA)	NCBI Sequence Viewer
	XP_007982628	(Get FASTA)	NCBI Sequence Viewer
	XP_007982629	(Get FASTA)	NCBI Sequence Viewer
	XP_037859784	(Get FASTA)	NCBI Sequence Viewer
	XP_037859785	(Get FASTA)	NCBI Sequence Viewer
	XP_037859787	(Get FASTA)	NCBI Sequence Viewer
	XP_037859788	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000010062
	ENSCSAP00000010062.1

RefSeq Acc Id:	XP_007982626 ⟸ XM_007984435
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RN73 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007982628 ⟸ XM_007984437
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RN73 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007982629 ⟸ XM_007984438
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RN73 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000010062 ⟸ ENSCSAT00000012009

RefSeq Acc Id:	XP_037859787 ⟸ XM_038003859
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RN73 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037859784 ⟸ XM_038003856
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_037859785 ⟸ XM_038003857
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RN73 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037859788 ⟸ XM_038003860
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000013913	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000012009.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1370.10	UniProtKB/TrEMBL
InterPro	KH_dom	UniProtKB/TrEMBL
	KH_dom_type_1	UniProtKB/TrEMBL
	KH_dom_type_1_sf	UniProtKB/TrEMBL
KEGG Report	csab:103227706	UniProtKB/TrEMBL
NCBI Gene	PCBP4	ENTREZGENE
PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	UniProtKB/TrEMBL
	PTHR10288:SF166	UniProtKB/TrEMBL
Pfam	KH_1	UniProtKB/TrEMBL
PROSITE	KH_TYPE_1	UniProtKB/TrEMBL
SMART	SM00322	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54791	UniProtKB/TrEMBL
UniProt	A0A0D9RN73	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations