USF2 (upstream transcription factor 2, c-fos interacting) - Rat Genome Database

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Gene: USF2 (upstream transcription factor 2, c-fos interacting) Chlorocebus sabaeus
Analyze
Symbol: USF2
Name: upstream transcription factor 2, c-fos interacting
RGD ID: 18633455
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN lactation (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); dystonia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: upstream stimulatory factor 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,202,224 - 30,212,783 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,202,375 - 30,213,058 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,976,409 - 7,987,328 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
USF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,202,224 - 30,212,783 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,202,375 - 30,213,058 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660737,976,409 - 7,987,328 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
USF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,268,962 - 35,279,821 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,268,962 - 35,279,821 (+)EnsemblGRCh38hg38GRCh38
GRCh371935,759,865 - 35,770,724 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,451,736 - 40,462,558 (+)NCBINCBI36Build 36hg18NCBI36
Build 341940,451,735 - 40,462,558NCBI
Celera1932,473,334 - 32,484,156 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,268,608 - 32,279,346 (+)NCBIHuRef
CHM1_11935,761,601 - 35,772,338 (+)NCBICHM1_1
T2T-CHM13v2.01937,813,633 - 37,824,489 (+)NCBIT2T-CHM13v2.0
Usf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,645,421 - 30,656,288 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,644,673 - 30,656,228 (-)EnsemblGRCm39 Ensembl
GRCm38730,945,248 - 30,956,951 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,945,248 - 30,956,803 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,730,267 - 31,741,822 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,654,756 - 30,665,539 (-)NCBIMGSCv36mm8
Celera725,511,313 - 25,522,504 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.27NCBI
Usf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,302,109 - 95,321,334 (-)NCBIGRCr8
mRatBN7.2186,174,703 - 86,185,942 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,174,703 - 86,185,617 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,594,835 - 91,606,038 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01100,060,999 - 100,072,201 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,353,133 - 93,364,336 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,371,798 - 89,383,005 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,371,794 - 89,382,463 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,527,311 - 90,538,532 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,981,897 - 85,993,346 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1186,060,007 - 86,071,457 (-)NCBI
Celera180,543,548 - 80,554,594 (-)NCBICelera
Cytogenetic Map1q21NCBI
Usf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,565,025 - 4,574,619 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554684,565,089 - 4,574,294 (+)NCBIChiLan1.0ChiLan1.0
USF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,281,473 - 41,292,355 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,264,861 - 43,275,723 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,215,305 - 32,226,172 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11940,954,115 - 40,963,542 (+)NCBIpanpan1.1PanPan1.1panPan2
USF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,308,882 - 117,319,397 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,309,222 - 117,367,616 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,711,852 - 116,721,252 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,908,795 - 117,918,184 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,908,795 - 117,918,329 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,471,547 - 117,480,906 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01117,097,401 - 117,106,770 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01118,152,947 - 118,162,349 (-)NCBIUU_Cfam_GSD_1.0
Usf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,621,639 - 10,633,186 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365701,012,654 - 1,024,288 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365701,012,696 - 1,024,243 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,774,008 - 44,783,592 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1644,774,417 - 44,783,594 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,194,539 - 40,203,590 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Usf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,261,561 - 8,270,527 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247948,261,078 - 8,270,527 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000002552   ⟹   ENSCSAP00000000856
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl630,202,375 - 30,213,058 (+)Ensembl
RefSeq Acc Id: XM_037991530   ⟹   XP_037847458
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660737,976,409 - 7,987,328 (+)NCBI
RefSeq Acc Id: XM_037991531   ⟹   XP_037847459
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660737,976,414 - 7,987,328 (+)NCBI
RefSeq Acc Id: XM_037991532   ⟹   XP_037847460
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660737,976,423 - 7,987,319 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037847458 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847459 (Get FASTA)   NCBI Sequence Viewer  
  XP_037847460 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000000856.1
Ensembl Acc Id: ENSCSAP00000000856   ⟸   ENSCSAT00000002552
RefSeq Acc Id: XP_037847458   ⟸   XM_037991530
- Peptide Label: isoform X1
- UniProtKB: A0A0D9QWW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037847459   ⟸   XM_037991531
- Peptide Label: isoform X2
- UniProtKB: A0A0D9QWW7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037847460   ⟸   XM_037991532
- Peptide Label: isoform X3
- UniProtKB: A0A0D9QWW7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000004521 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000002552.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  USF UniProtKB/TrEMBL
NCBI Gene USF2 ENTREZGENE
PANTHER FI24210P1 UniProtKB/TrEMBL
  UPSTREAM STIMULATORY FACTOR 2 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A0D9QWW7 ENTREZGENE, UniProtKB/TrEMBL