KLHDC7B (kelch domain containing 7B) - Rat Genome Database

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Gene: KLHDC7B (kelch domain containing 7B) Chlorocebus sabaeus
Analyze
Symbol: KLHDC7B
Name: kelch domain containing 7B
RGD ID: 18630189
Description: ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 22q13 duplication syndrome (ortholog); congenital disorder of glycosylation Ig (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kelch domain-containing protein 7B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11933,020,849 - 33,022,961 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604592,318,563 - 92,324,913 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
KLHDC7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11933,020,849 - 33,022,961 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604592,318,563 - 92,324,913 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
KLHDC7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,545,899 - 50,551,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,545,899 - 50,551,023 (+)EnsemblGRCh38hg38GRCh38
GRCh372250,984,328 - 50,989,452 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,333,328 - 49,335,409 (+)NCBINCBI36Build 36hg18NCBI36
Celera2234,862,494 - 34,865,484 (+)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,877,486 - 33,880,476 (+)NCBIHuRef
CHM1_12250,945,155 - 50,948,145 (+)NCBICHM1_1
T2T-CHM13v2.02251,056,466 - 51,061,530 (+)NCBIT2T-CHM13v2.0
Klhdc7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,268,262 - 89,274,025 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,269,120 - 89,273,070 (+)EnsemblGRCm39 Ensembl
GRCm381589,384,059 - 89,389,822 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,384,917 - 89,388,867 (+)EnsemblGRCm38mm10GRCm38
MGSCv371589,217,322 - 89,219,139 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,212,684 - 89,216,475 (+)NCBIMGSCv36mm8
Celera1591,516,029 - 91,517,846 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.87NCBI
Klhdc7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,331,708 - 122,335,364 (+)NCBIGRCr8
mRatBN7.27120,452,081 - 120,455,737 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,453,932 - 120,455,737 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,203,577 - 122,207,233 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,429,731 - 124,433,387 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,392,448 - 124,396,104 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,357,589 - 130,359,529 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,357,643 - 130,359,448 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,042,825 - 130,044,630 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,681,681 - 127,683,486 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7116,926,841 - 116,928,781 (+)NCBICelera
Cytogenetic Map7q34NCBI
Klhdc7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541333,534,794 - 33,536,614 (+)NCBIChiLan1.0ChiLan1.0
KLHDC7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,465,538 - 60,470,836 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,156,559 - 63,161,639 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,792,136 - 30,797,297 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,902,965 - 49,908,006 (+)NCBIpanpan1.1PanPan1.1panPan2
KLHDC7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,772,594 - 16,775,506 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,750,383 - 16,754,844 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,499,142 - 17,503,603 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11017,223,444 - 17,234,300 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,546,486 - 17,550,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,678,672 - 17,683,134 (-)NCBIUU_Cfam_GSD_1.0
Klhdc7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945281,412 - 286,093 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936629282,194 - 284,017 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLHDC7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5202,137 - 203,951 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15202,137 - 203,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,576,801 - 110,578,615 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Klhdc7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624752235,932 - 238,153 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 10
Below cutoff 14 10 14

Sequence


Reference Sequences
RefSeq Acc Id: XM_038007231   ⟹   XP_037863159
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604592,318,563 - 92,324,913 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037863159 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000018801.1
Reference Protein Sequences
RefSeq Acc Id: XP_037863159   ⟸   XM_038007231


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000019291 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000019381.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.80 UniProtKB/TrEMBL
InterPro Kelch-typ_b-propeller UniProtKB/TrEMBL
  Kelch_1 UniProtKB/TrEMBL
KEGG Report csab:103223571 UniProtKB/TrEMBL
NCBI Gene KLHDC7B ENTREZGENE
PANTHER BTB_2 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  KELCH DOMAIN-CONTAINING PROTEIN 7B UniProtKB/TrEMBL
Pfam Kelch_1 UniProtKB/TrEMBL
SMART Kelch UniProtKB/TrEMBL
Superfamily-SCOP SSF117281 UniProtKB/TrEMBL
UniProt A0A0D9SD62_CHLSB UniProtKB/TrEMBL