AKNA (AT-hook transcription factor) - Rat Genome Database

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Gene: AKNA (AT-hook transcription factor) Chlorocebus sabaeus
Analyze
Symbol: AKNA
Name: AT-hook transcription factor
RGD ID: 18626170
Description: INVOLVED IN delamination (inferred); epithelial to mesenchymal transition (inferred); neuroblast delamination (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN centriole (inferred); centrosome (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-hook-containing transcription factor; microtubule organization protein AKNA
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11225,193,487 - 25,254,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1225,210,518 - 25,254,051 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603517,569,241 - 17,631,854 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
AKNA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11225,193,487 - 25,254,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1225,210,518 - 25,254,051 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603517,569,241 - 17,631,854 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AKNA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389114,330,504 - 114,398,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9114,334,156 - 114,394,405 (-)EnsemblGRCh38hg38GRCh38
GRCh379117,096,436 - 117,156,685 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369116,136,250 - 116,196,506 (-)NCBINCBI36Build 36hg18NCBI36
Build 349114,177,998 - 114,236,239NCBI
Celera987,744,104 - 87,804,342 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef986,701,707 - 86,762,026 (-)NCBIHuRef
CHM1_19117,243,149 - 117,303,426 (-)NCBICHM1_1
T2T-CHM13v2.09126,524,242 - 126,590,941 (-)NCBIT2T-CHM13v2.0
Akna
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39463,285,364 - 63,328,988 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl463,285,362 - 63,321,591 (-)EnsemblGRCm39 Ensembl
GRCm38463,367,123 - 63,411,094 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl463,367,125 - 63,403,354 (-)EnsemblGRCm38mm10GRCm38
MGSCv37463,028,161 - 63,064,479 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36463,028,159 - 63,064,388 (-)NCBIMGSCv36mm8
Celera462,006,422 - 62,062,917 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.96NCBI
Akna
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8581,792,928 - 81,839,936 (-)NCBIGRCr8
mRatBN7.2576,777,415 - 76,824,380 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl576,777,415 - 76,816,017 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx579,176,501 - 79,215,123 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,993,646 - 81,032,278 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,969,140 - 81,007,776 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0579,184,087 - 79,232,370 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl579,184,088 - 79,222,687 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0583,298,321 - 83,345,221 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4580,329,462 - 80,368,061 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1580,335,469 - 80,367,838 (-)NCBI
Celera575,711,329 - 75,749,931 (-)NCBICelera
Cytogenetic Map5q24NCBI
Akna
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541913,218,060 - 13,261,289 (+)NCBIChiLan1.0ChiLan1.0
AKNA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21124,978,619 - 25,041,084 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1924,980,974 - 25,043,376 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0985,433,337 - 85,496,725 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19113,798,225 - 113,858,637 (-)NCBIpanpan1.1PanPan1.1panPan2
AKNA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11168,561,522 - 68,600,724 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1168,562,145 - 68,598,557 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1166,963,594 - 67,015,403 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01169,685,075 - 69,735,745 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1169,685,086 - 69,726,540 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11168,200,458 - 68,251,202 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01168,241,770 - 68,292,620 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,970,892 - 69,009,519 (-)NCBIUU_Cfam_GSD_1.0
Akna
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947183,852,650 - 183,893,483 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364873,620,547 - 3,653,447 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364873,620,585 - 3,664,170 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKNA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,945,239 - 254,987,764 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11254,942,874 - 255,004,453 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21285,921,035 - 286,081,283 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Akna
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476020,804,512 - 20,839,654 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476020,791,147 - 20,840,476 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 20
Low 36 60
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000011031   ⟹   ENSCSAP00000009113
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1225,210,518 - 25,254,051 (+)Ensembl
RefSeq Acc Id: XM_007968307   ⟹   XP_007966498
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11225,193,487 - 25,254,018 (+)NCBI
Vero_WHO_p1.0NW_02366603517,569,241 - 17,631,854 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007968308   ⟹   XP_007966499
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11225,202,593 - 25,254,018 (+)NCBI
Vero_WHO_p1.0NW_02366603517,569,241 - 17,623,191 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007968309   ⟹   XP_007966500
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11225,193,993 - 25,254,018 (+)NCBI
Vero_WHO_p1.0NW_02366603517,569,241 - 17,631,364 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007968310   ⟹   XP_007966501
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11225,201,262 - 25,254,018 (+)NCBI
Vero_WHO_p1.0NW_02366603517,569,241 - 17,624,819 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037984084   ⟹   XP_037840012
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603517,569,241 - 17,631,799 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007966498 (Get FASTA)   NCBI Sequence Viewer  
  XP_007966499 (Get FASTA)   NCBI Sequence Viewer  
  XP_007966500 (Get FASTA)   NCBI Sequence Viewer  
  XP_007966501 (Get FASTA)   NCBI Sequence Viewer  
  XP_037840012 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009113.1
Reference Protein Sequences
RefSeq Acc Id: XP_007966498   ⟸   XM_007968307
- UniProtKB: A0A0D9RKH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007966500   ⟸   XM_007968309
- UniProtKB: A0A0D9RKH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007966501   ⟸   XM_007968310
- UniProtKB: A0A0D9RKH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007966499   ⟸   XM_007968308
- UniProtKB: A0A0D9RKH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000009113   ⟸   ENSCSAT00000011031
RefSeq Acc Id: XP_037840012   ⟸   XM_037984084
- UniProtKB: A0A0D9RKH4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012940 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011031.1 UniProtKB/TrEMBL
InterPro AKNA UniProtKB/TrEMBL
NCBI Gene AKNA ENTREZGENE
PANTHER MICROTUBULE ORGANIZATION PROTEIN AKNA UniProtKB/TrEMBL
  PTHR21510 UniProtKB/TrEMBL
Pfam AKNA UniProtKB/TrEMBL
UniProt A0A0D9RKH4 ENTREZGENE, UniProtKB/TrEMBL