NCALD (neurocalcin delta) - Rat Genome Database

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Gene: NCALD (neurocalcin delta) Chlorocebus sabaeus
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Symbol: NCALD
Name: neurocalcin delta
RGD ID: 18621794
Description: ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); clathrin binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); regulation of systemic arterial blood pressure (ortholog); ASSOCIATED WITH Cohen syndrome (ortholog); COVID-19 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin, type I cytoskeletal 9-like; LOC103237232; neurocalcin-delta; uncharacterized protein LOC103237232
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1896,530,414 - 96,735,422 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl896,530,302 - 96,644,281 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603943,688,236 - 44,147,311 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NCALD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1896,530,414 - 96,735,422 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl896,530,302 - 96,644,281 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603943,688,236 - 44,147,311 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
NCALD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388101,686,542 - 102,124,907 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8101,686,542 - 102,124,907 (-)EnsemblGRCh38hg38GRCh38
GRCh378102,698,770 - 103,137,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368102,767,946 - 103,206,311 (-)NCBINCBI36Build 36hg18NCBI36
Build 348102,768,135 - 102,872,363NCBI
Celera898,883,681 - 99,322,037 (-)NCBICelera
Cytogenetic Map8q22.3NCBI
HuRef897,897,521 - 98,335,560 (-)NCBIHuRef
CHM1_18102,739,049 - 103,177,412 (-)NCBICHM1_1
T2T-CHM13v2.08102,812,429 - 103,250,775 (-)NCBIT2T-CHM13v2.0
Ncald
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391537,366,419 - 37,792,816 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1537,366,419 - 37,792,814 (-)EnsemblGRCm39 Ensembl
GRCm381537,366,175 - 37,792,519 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1537,366,175 - 37,792,570 (-)EnsemblGRCm38mm10GRCm38
MGSCv371537,295,930 - 37,722,183 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361537,310,764 - 37,736,996 (-)NCBIMGSCv36mm8
Celera1537,985,866 - 38,409,233 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.94NCBI
Ncald
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8770,417,683 - 70,849,763 (-)NCBIGRCr8
mRatBN7.2768,532,671 - 68,964,740 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl768,534,421 - 68,964,496 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx770,413,123 - 70,509,252 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0772,615,615 - 72,711,744 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0772,483,638 - 72,579,779 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0776,199,305 - 76,632,847 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl776,199,306 - 76,488,216 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0776,320,073 - 76,747,866 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4772,875,314 - 72,976,373 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera765,599,587 - 65,694,343 (-)NCBICelera
Cytogenetic Map7q22NCBI
Ncald
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541726,535,859 - 26,563,301 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541726,535,859 - 26,885,944 (-)NCBIChiLan1.0ChiLan1.0
NCALD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27119,034,818 - 119,478,001 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1894,571,093 - 95,014,200 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0898,324,885 - 98,767,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18100,488,400 - 100,931,079 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8100,488,400 - 100,520,842 (-)Ensemblpanpan1.1panPan2
NCALD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1133,367,036 - 3,678,505 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl133,369,570 - 3,512,566 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha133,366,895 - 3,737,167 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0133,524,683 - 3,895,032 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl133,524,689 - 3,838,298 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1133,367,969 - 3,738,210 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0133,480,588 - 3,850,984 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0133,497,712 - 3,868,004 (-)NCBIUU_Cfam_GSD_1.0
Ncald
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530334,035,139 - 34,426,252 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647041,573,238 - 41,852,337 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647041,573,238 - 41,852,349 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCALD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl435,186,182 - 35,367,412 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1434,924,261 - 35,369,393 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2437,798,498 - 38,264,852 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ncald
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476318,920,207 - 19,084,875 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476318,918,781 - 19,191,221 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 25 52
Low 11 20 8
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000010071   ⟹   ENSCSAP00000008168
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl896,530,302 - 96,644,281 (-)Ensembl
RefSeq Acc Id: XM_008001253   ⟹   XP_007999444
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1896,530,608 - 96,735,422 (-)NCBI
Vero_WHO_p1.0NW_02366603943,688,236 - 44,147,311 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008001254   ⟹   XP_007999445
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1896,530,414 - 96,644,982 (-)NCBI
Vero_WHO_p1.0NW_02366603944,032,008 - 44,147,311 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007999444 (Get FASTA)   NCBI Sequence Viewer  
  XP_007999445 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008168
  ENSCSAP00000008168.1
RefSeq Acc Id: XP_007999445   ⟸   XM_008001254
- UniProtKB: A0A0D9RHS9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007999444   ⟸   XM_008001253
- UniProtKB: A0A0D9RHS9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000008168   ⟸   ENSCSAT00000010071


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011979 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010071.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Recoverin UniProtKB/TrEMBL
KEGG Report csab:103237234 UniProtKB/TrEMBL
NCBI Gene NCALD ENTREZGENE
PANTHER NEUROCALCIN-DELTA UniProtKB/TrEMBL
  PTHR23055 UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/TrEMBL
  EF-hand_7 UniProtKB/TrEMBL
PRINTS RECOVERIN UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0D9RHS9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 NCALD  neurocalcin delta  LOC103237232  keratin, type I cytoskeletal 9-like  Data merged from RGD:18763806 737654 PROVISIONAL