ZBTB18 (zinc finger and BTB domain containing 18) - Rat Genome Database

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Gene: ZBTB18 (zinc finger and BTB domain containing 18) Chlorocebus sabaeus
Analyze
Symbol: ZBTB18
Name: zinc finger and BTB domain containing 18
RGD ID: 18621464
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cerebellum development (ortholog); cerebral cortex development (ortholog); hippocampus development (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder (ortholog); autosomal dominant intellectual developmental disorder 22 (ortholog); developmental and epileptic encephalopathy 54 (ortholog); FOUND IN heterochromatin (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain-containing protein 18
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12581,077,011 - 81,085,049 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605583,261,294 - 83,270,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZBTB18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12581,077,011 - 81,085,049 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605583,261,294 - 83,270,100 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZBTB18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381244,048,491 - 244,057,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1244,048,547 - 244,057,476 (+)EnsemblGRCh38hg38GRCh38
GRCh371244,211,955 - 244,220,778 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361242,281,184 - 242,287,401 (+)NCBINCBI36Build 36hg18NCBI36
Build 341240,540,625 - 240,546,817NCBI
Celera1217,504,910 - 217,511,127 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1214,598,471 - 214,604,688 (+)NCBIHuRef
CHM1_11245,484,555 - 245,493,088 (+)NCBICHM1_1
T2T-CHM13v2.01243,465,054 - 243,473,966 (+)NCBIT2T-CHM13v2.0
Zbtb18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,269,892 - 177,278,330 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1177,269,917 - 177,278,330 (+)EnsemblGRCm39 Ensembl
GRCm381177,442,351 - 177,450,764 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,442,351 - 177,450,764 (+)EnsemblGRCm38mm10GRCm38
MGSCv371179,374,792 - 179,380,895 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361179,281,336 - 179,287,439 (+)NCBIMGSCv36mm8
Celera1184,508,151 - 184,514,258 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map182.72NCBI
Zbtb18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81391,971,602 - 91,980,058 (+)NCBIGRCr8
mRatBN7.21389,439,501 - 89,447,958 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1389,439,420 - 89,448,862 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1391,944,737 - 91,953,193 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01393,344,946 - 93,353,402 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01390,525,391 - 90,533,843 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01395,582,234 - 95,593,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1395,589,668 - 95,591,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013100,031,993 - 100,039,682 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41393,345,905 - 93,347,473 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11393,534,788 - 93,536,357 (+)NCBI
Celera1389,005,808 - 89,007,376 (+)NCBICelera
Cytogenetic Map13q25NCBI
Zbtb18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554067,364,080 - 7,373,483 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554067,364,080 - 7,372,038 (+)NCBIChiLan1.0ChiLan1.0
ZBTB18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215,082,670 - 5,091,312 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan115,304,714 - 5,313,352 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01219,660,496 - 219,669,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11225,042,282 - 225,050,259 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1225,042,281 - 225,050,259 (+)Ensemblpanpan1.1panPan2
ZBTB18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1735,123,417 - 35,130,349 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl735,117,209 - 35,129,134 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha734,597,536 - 34,605,025 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0734,950,266 - 34,957,787 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl734,857,686 - 34,958,027 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1734,787,410 - 34,794,904 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0734,803,630 - 34,811,140 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0735,068,175 - 35,075,704 (+)NCBIUU_Cfam_GSD_1.0
Zbtb18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934448,033,306 - 48,041,262 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365266,705,983 - 6,712,281 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365266,706,035 - 6,714,011 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1016,913,025 - 16,920,586 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11016,913,022 - 16,921,722 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21019,351,349 - 19,359,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Zbtb18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477115,425,604 - 15,430,542 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477115,425,610 - 15,432,012 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_007989985   ⟹   XP_007988176
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12581,077,011 - 81,085,049 (+)NCBI
Vero_WHO_p1.0NW_02366605583,263,823 - 83,270,100 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007989986   ⟹   XP_007988177
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12581,080,385 - 81,085,049 (+)NCBI
Vero_WHO_p1.0NW_02366605583,264,083 - 83,270,100 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037986078   ⟹   XP_037842006
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605583,261,294 - 83,270,100 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007988176 (Get FASTA)   NCBI Sequence Viewer  
  XP_007988177 (Get FASTA)   NCBI Sequence Viewer  
  XP_037842006 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007988176   ⟸   XM_007989985
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007988177   ⟸   XM_007989986
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037842006   ⟸   XM_037986078
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene ZBTB18 ENTREZGENE