SLC26A4 (solute carrier family 26 member 4) - Rat Genome Database

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Gene: SLC26A4 (solute carrier family 26 member 4) Chlorocebus sabaeus
Analyze
Symbol: SLC26A4
Name: solute carrier family 26 member 4
RGD ID: 18619123
Description: ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); iodide transmembrane transporter activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH Acidoses (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 4 (ortholog); FOUND IN apical plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pendrin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,578,035 - 76,631,725 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,578,665 - 76,633,165 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,231,539 - 27,289,239 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC26A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12176,578,035 - 76,631,725 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2176,578,665 - 76,633,165 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604227,231,539 - 27,289,239 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC26A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,660,828 - 107,717,809 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,660,828 - 107,717,809 (+)EnsemblGRCh38hg38GRCh38
GRCh377107,301,273 - 107,358,254 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367107,088,316 - 107,145,490 (+)NCBINCBI36Build 36hg18NCBI36
Build 347106,895,030 - 106,952,201NCBI
Celera7102,106,401 - 102,163,591 (+)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,661,478 - 101,718,643 (+)NCBIHuRef
CHM1_17107,235,048 - 107,292,246 (+)NCBICHM1_1
T2T-CHM13v2.07108,976,971 - 109,033,936 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,662,192 - 106,719,369 (+)NCBI
Slc26a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391231,569,813 - 31,610,054 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1231,569,826 - 31,609,968 (-)EnsemblGRCm39 Ensembl
GRCm381231,519,814 - 31,560,055 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,519,827 - 31,559,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv371232,204,684 - 32,244,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361232,105,578 - 32,145,728 (-)NCBIMGSCv36mm8
Celera1232,968,822 - 33,008,973 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1213.53NCBI
Slc26a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8653,835,102 - 53,873,968 (-)NCBIGRCr8
mRatBN7.2648,107,575 - 48,153,762 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,107,588 - 48,145,703 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx648,413,592 - 48,453,234 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0648,728,513 - 48,768,155 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,168,792 - 48,208,193 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0650,809,103 - 50,848,443 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl650,808,923 - 50,846,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0659,479,842 - 59,520,531 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4649,389,212 - 49,427,000 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1649,392,337 - 49,430,126 (-)NCBI
Celera647,310,126 - 47,347,924 (-)NCBICelera
Cytogenetic Map6q16NCBI
Slc26a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541012,009,102 - 12,059,637 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541012,008,067 - 12,057,147 (+)NCBIChiLan1.0ChiLan1.0
SLC26A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26144,504,830 - 144,562,226 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17192,774,798 - 192,832,194 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,640,703 - 99,698,109 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17112,363,119 - 112,418,633 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7112,364,126 - 112,415,637 (+)Ensemblpanpan1.1panPan2
SLC26A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11812,894,347 - 12,941,669 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1812,894,669 - 12,943,212 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1812,536,263 - 12,586,953 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01813,163,396 - 13,214,301 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,165,741 - 13,213,145 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11812,980,322 - 13,030,889 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01812,900,588 - 12,950,775 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,129,256 - 13,179,537 (-)NCBIUU_Cfam_GSD_1.0
Slc26a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,311,980 - 55,358,504 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,435,739 - 16,481,332 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,435,779 - 16,483,139 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9107,365,814 - 107,431,062 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19107,365,121 - 107,431,065 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29118,119,384 - 118,183,897 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Slc26a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,047,704 - 22,100,154 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473922,047,771 - 22,100,130 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 20 16 60
Below cutoff 16 3

Sequence


RefSeq Acc Id: ENSCSAT00000009432   ⟹   ENSCSAP00000007550
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2176,578,665 - 76,633,165 (+)Ensembl
RefSeq Acc Id: XM_007982547   ⟹   XP_007980738
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12176,578,074 - 76,631,725 (+)NCBI
Vero_WHO_p1.0NW_02366604227,231,539 - 27,289,239 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007980738 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000007550
  ENSCSAP00000007550.1
RefSeq Acc Id: XP_007980738   ⟸   XM_007982547
- UniProtKB: A0A0D9RG11 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000007550   ⟸   ENSCSAT00000009432


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000011344 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000009432.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.750.24 UniProtKB/TrEMBL
InterPro S04_transporter_CS UniProtKB/TrEMBL
  SLC26A/SulP_dom UniProtKB/TrEMBL
  SLC26A/SulP_fam UniProtKB/TrEMBL
  STAS_dom UniProtKB/TrEMBL
  STAS_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103226721 UniProtKB/TrEMBL
NCBI Gene SLC26A4 ENTREZGENE
PANTHER PTHR11814 UniProtKB/TrEMBL
  PTHR11814:SF33 UniProtKB/TrEMBL
Pfam STAS UniProtKB/TrEMBL
  Sulfate_transp UniProtKB/TrEMBL
PROSITE SLC26A UniProtKB/TrEMBL
  STAS UniProtKB/TrEMBL
Superfamily-SCOP SSF52091 UniProtKB/TrEMBL
UniProt A0A0D9RG11 ENTREZGENE, UniProtKB/TrEMBL