SIAE (sialic acid acetylesterase) - Rat Genome Database

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Gene: SIAE (sialic acid acetylesterase) Chlorocebus sabaeus
Analyze
Symbol: SIAE
Name: sialic acid acetylesterase
RGD ID: 18618955
Description: ENCODES a protein that exhibits hydrolase activity (inferred); sialate O-acetylesterase activity (inferred); INVOLVED IN carbohydrate metabolic process (inferred); regulation of immune system process (inferred); ASSOCIATED WITH autoimmune disease (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); FOUND IN lysosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sialate O-acetylesterase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11115,782,624 - 115,822,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1115,782,964 - 115,820,284 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604310,296,759 - 10,334,554 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
lysosome  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SIAE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11115,782,624 - 115,822,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1115,782,964 - 115,820,284 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604310,296,759 - 10,334,554 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SIAE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811124,633,113 - 124,676,303 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11124,633,113 - 124,695,707 (-)EnsemblGRCh38hg38GRCh38
GRCh3711124,503,009 - 124,546,199 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611124,010,903 - 124,048,927 (-)NCBINCBI36Build 36hg18NCBI36
Celera11121,665,869 - 121,703,894 (-)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11120,448,144 - 120,488,613 (-)NCBIHuRef
CHM1_111124,391,816 - 124,432,334 (-)NCBICHM1_1
T2T-CHM13v2.011124,661,771 - 124,704,961 (-)NCBIT2T-CHM13v2.0
Siae
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39937,525,117 - 37,559,554 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl937,466,994 - 37,560,951 (+)EnsemblGRCm39 Ensembl
GRCm38937,613,821 - 37,648,258 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl937,555,698 - 37,649,655 (+)EnsemblGRCm38mm10GRCm38
MGSCv37937,421,432 - 37,455,903 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36937,363,518 - 37,397,989 (+)NCBIMGSCv36mm8
Celera934,830,942 - 34,865,371 (+)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.79NCBI
Siae
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8845,507,465 - 45,542,740 (+)NCBIGRCr8
mRatBN7.2837,318,724 - 37,354,004 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl837,318,747 - 37,353,996 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx841,335,011 - 41,370,367 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0839,618,074 - 39,653,431 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0837,480,954 - 37,516,313 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0840,078,269 - 40,113,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl840,078,269 - 40,113,514 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0840,079,093 - 40,114,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4838,854,154 - 38,889,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1838,862,919 - 38,896,428 (+)NCBI
Celera837,101,383 - 37,136,604 (-)NCBICelera
Cytogenetic Map8q22NCBI
Siae
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541225,703,591 - 25,792,252 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541225,704,024 - 25,741,646 (-)NCBIChiLan1.0ChiLan1.0
SIAE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29125,331,987 - 125,371,605 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111126,436,869 - 126,476,476 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011119,463,554 - 119,503,192 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111123,378,866 - 123,416,935 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11123,378,866 - 123,416,935 (-)Ensemblpanpan1.1panPan2
SIAE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.159,719,444 - 9,770,574 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl59,731,394 - 9,769,227 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha59,764,289 - 9,815,399 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.059,659,068 - 9,710,228 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl59,621,463 - 9,754,225 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.159,731,219 - 9,782,258 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.059,701,662 - 9,752,761 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.059,750,359 - 9,789,276 (+)NCBIUU_Cfam_GSD_1.0
Siae
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947106,860,332 - 106,894,503 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367431,109,211 - 1,142,807 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367431,105,461 - 1,142,028 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SIAE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl951,879,224 - 51,918,827 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1951,879,220 - 51,918,974 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2957,397,132 - 57,436,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Siae
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624927637,175 - 678,780 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624927636,134 - 678,367 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 33 53
Low 3 20 7
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000000399   ⟹   ENSCSAP00000015659
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1115,782,964 - 115,820,284 (-)Ensembl
RefSeq Acc Id: XM_008021338   ⟹   XP_008019529
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11115,782,624 - 115,820,437 (-)NCBI
Vero_WHO_p1.0NW_02366604310,296,759 - 10,334,554 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008019529 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015659
  ENSCSAP00000015659.1
RefSeq Acc Id: XP_008019529   ⟸   XM_008021338
- UniProtKB: A0A0D9S470 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000015659   ⟸   ENSCSAT00000000399


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002381 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000399.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1110 UniProtKB/TrEMBL
InterPro SASA UniProtKB/TrEMBL
  SGNH_hydro_sf UniProtKB/TrEMBL
  SIAE UniProtKB/TrEMBL
NCBI Gene SIAE ENTREZGENE
PANTHER PTHR22901 UniProtKB/TrEMBL
  SIALATE O-ACETYLESTERASE UniProtKB/TrEMBL
Pfam SASA UniProtKB/TrEMBL
Superfamily-SCOP SGNH hydrolase UniProtKB/TrEMBL
UniProt A0A0D9S470 ENTREZGENE, UniProtKB/TrEMBL