UBE2Q1 (ubiquitin conjugating enzyme E2 Q1)

Gene: UBE2Q1 (ubiquitin conjugating enzyme E2 Q1) Chlorocebus sabaeus

Analyze

Symbol:

UBE2Q1

Name:

ubiquitin conjugating enzyme E2 Q1

RGD ID:

18617525

Description:

ENCODES a protein that exhibits ubiquitin conjugating enzyme activity (inferred); INVOLVED IN embryo implantation (ortholog); fertilization (ortholog); mating behavior (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); dyschromatosis symmetrica hereditaria (ortholog); gastrointestinal stromal tumor (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ubiquitin-conjugating enzyme E2 Q1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	9,264,456 - 9,273,550 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	9,264,225 - 9,274,979 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	8,603,245 - 8,613,746 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 2 (ISO)

dyschromatosis symmetrica hereditaria (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 42 (ISO)

MHC class II deficiency (ISO)

parathyroid carcinoma (ISO)

severe congenital neutropenia 3 (ISO)

severe congenital neutropenia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

embryo implantation (IEA,ISO)

fertilization (IEA,ISO)

mating behavior (IEA,ISO)

prolactin secretion (IEA,ISO)

reproductive system development (IEA,ISO)

suckling behavior (IEA,ISO)

Molecular Function

protein binding (ISO)

ubiquitin conjugating enzyme activity (IEA)

References

Genomics

Comparative Map Data

UBE2Q1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	9,264,456 - 9,273,550 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	9,264,225 - 9,274,979 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	8,603,245 - 8,613,746 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

UBE2Q1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	154,548,577 - 154,558,662 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	154,548,577 - 154,559,028 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	154,521,053 - 154,531,138 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	152,787,675 - 152,797,744 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	151,334,123 - 151,344,193	NCBI
Celera	1	127,592,683 - 127,602,752 (-)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	125,884,587 - 125,894,578 (-)	NCBI		HuRef
CHM1_1	1	155,917,454 - 155,927,523 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	153,685,704 - 153,695,786 (-)	NCBI		T2T-CHM13v2.0

Ube2q1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	89,680,905 - 89,691,304 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	89,680,923 - 89,691,307 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	89,773,609 - 89,783,997 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	89,773,616 - 89,784,000 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	89,577,531 - 89,587,919 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	89,859,543 - 89,869,922 (+)	NCBI		MGSCv36	mm8
Celera	3	89,810,035 - 89,820,909 (+)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.19	NCBI

Ube2q1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	177,496,480 - 177,505,631 (+)	NCBI		GRCr8
mRatBN7.2	2	175,198,793 - 175,209,152 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,198,873 - 175,207,942 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	182,347,524 - 182,356,614 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	180,369,910 - 180,378,998 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	174,970,799 - 174,979,871 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,106,039 - 189,115,110 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,106,039 - 189,115,108 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	208,528,810 - 208,537,961 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	181,978,842 - 181,987,913 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	181,927,883 - 181,939,251 (+)	NCBI
Celera	2	169,141,378 - 169,150,449 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Ube2q1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	1,046,138 - 1,055,806 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	1,047,536 - 1,055,806 (-)	NCBI	ChiLan1.0	ChiLan1.0

UBE2Q1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	95,275,371 - 95,284,063 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	95,007,724 - 95,016,405 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	129,904,971 - 129,913,640 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	133,515,618 - 133,525,386 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	133,515,618 - 133,525,390 (-)	Ensembl	panpan1.1		panPan2

UBE2Q1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	42,806,185 - 42,813,586 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	42,806,185 - 42,814,747 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,296,340 - 42,303,991 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	42,675,595 - 42,683,240 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	42,675,590 - 42,684,206 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	42,454,840 - 42,462,485 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	42,508,670 - 42,516,321 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	42,792,296 - 42,799,941 (+)	NCBI		UU_Cfam_GSD_1.0

Ube2q1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	25,119,496 - 25,127,797 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	4,148,503 - 4,158,272 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	4,148,537 - 4,158,195 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBE2Q1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	95,221,199 - 95,229,530 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	95,221,149 - 95,229,533 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,047,154 - 104,055,539 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ube2q1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	2,857,442 - 2,867,056 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	2,857,819 - 2,865,891 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	13	60
Low		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007976976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000016570 ⟹ ENSCSAP00000016076

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	9,264,225 - 9,274,979 (+)	Ensembl

RefSeq Acc Id:

XM_007976976 ⟹ XP_007975167

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	9,264,456 - 9,273,550 (+)	NCBI
Vero_WHO_p1.0	NW_023666038	8,603,245 - 8,613,746 (+)	NCBI

Sequence:

show sequence

CGGCGCCATCTTGGCGAAGGGGGGATCAGGAAGTGCGGACCGCGGCGGCGGCGGCGGCGGAGCC
CGGAGCGGAGGCCGGAGGCTCCCGGCCCGCCGGCCCCGGAGCGGAGCGGAGCGGAGGATGCAGC
AGCCGCAGCCGCAGGGGCAGCAGCAGCCGGGGCCGGGGCAGCAGCTGGGGGGCCAGGGGGCGGC
GCCGGGGGCCGGGGGCGGCCCAGGGGGGGGCCCGGGGCCGGGGCCCTGCCTGAGGCGAGAGCTG
AAGCTGCTCGAGTCCATCTTCCACCGCGGCCACGAGCGCTTCCGCATTGCCAGCGCCTGCCTGG
ACGAGCTGAGCTGCGAGTTCCTGCTGGCTGGGGCCGGAGGGGCCGGGGCGGGGGCCGCGCCCGG
ACCGCATCTCCCCCCACGGGGGTCGGTGCCTGGCGATCCTGTCCGCATCCACTGCAACATCACG
GAGTCATATCCTGCTGTGCCCCCCATCTGGTCCGTGGAGTCTGATGACCCTAACTTGGCTGCTG
TCTTGGAGAGGCTGGTGGACATAAAGAAAGGGAATACTCTGCTATTGCAGCATCTGAAGAGGAT
CATCTCCGACCTGTGTAAACTCTATAACCTCCCTCAGCATCCAGATGTGGAGATGCTGGATCAA
CCCTTGCCAGCAGAGCAGTGCACACAGGAAGACGTGTCTTCAGAAGATGAAGATGAGGAGATGC
CTGAGGACACAGAAGACTTAGATCACTATGAAATGAAAGAGGAAGAGCCAGCTGAGGGCAAGAA
ATCTGAAGATGATGGCATTGGAAAAGAAAACTTGGCCATCCTAGAGAAAATTAAAAAGAACCAG
AGGCAAGATTACTTAAATGGTGCAGTGTCTGGCTCGGTGCAGGCCACTGACCGGCTGATGAAGG
AGCTCAGGGATATATACCGATCACAGAGTTTCAAAGGCGGAAACTATGCAGTCGAACTCGTGAA
TGACAGTCTGTATGATTGGAATGTCAAACTCCTCAAAGTTGACCAGGACAGCGCTTTGCACAAC
GATCTCCAGATCCTCAAAGAGAAAGAAGGAGCCGACTTCATCCTACTTAACTTTTCCTTTAAAG
ATAACTTTCCCTTTGACCCACCATTTGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGGGTATGT
TCTGGGCGGAGGGGCCATCTGCATGGAACTTCTCACCAAACAGGGCTGGAGCAGTGCCTACTCC
ATAGAGTCAGTGATCATGCAGATCAGTGCCACACTGGTGAAGGGGAAAGCACGAGTGCAGTTTG
GAGCCAACAAATCTCAATACAGTCTGACAAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGAT
CCACGAAAAAAACGGCTGGTACACACCCCCAAAGGAAGACGGCTAACCCTGGAGTATCACCCTT
CCTCCCTCCCCAGGCACCACTGGACCAATTACCTTTGAATGCTGTATTTGGATCTCACGCTGCC
TCTGTGGTTCCCTCCCTCATTTTTCCTGGACGTGATAGCTCTGCCTATTGCAGGACAATGATGG
CTATTCTAAACGCTAAGGAAAAAAAAAACAAACACAGAACTGTTTCAAGTACTCGAGACTGACT
TACAGACCAACCAACCACCTTGCTGGAACCCTTGCTAGCAGGCATTCTTATAAAAGAAACTTTC
AAGCCTCCTTATATTGCTGGAAACTCAGCTGTGCTCCAGACTAGAGCCTCCTTACCTATGCTAT
GGATTTTTAATTTATTTTCTCTTATTTCATGTACACTGCTTTTTTTGGTTACAGTGTATGATGG
ATGTGTATGAAAAAAATGTATCTTTGGGAAAACAATTACAGTTTGTTAATTTGAAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007975167	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016076
	ENSCSAP00000016076.1

RefSeq Acc Id:	XP_007975167 ⟸ XM_007976976
- UniProtKB:	A0A0D9S5D7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000016076 ⟸ ENSCSAT00000016570

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001959	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000016570.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.110.10	UniProtKB/TrEMBL
InterPro	UBQ-conjugat_E2	UniProtKB/TrEMBL
	UBQ-conjugating_enzyme/RWD	UniProtKB/TrEMBL
KEGG Report	csab:103223923	UniProtKB/TrEMBL
NCBI Gene	UBE2Q1	ENTREZGENE
Pfam	UQ_con	UniProtKB/TrEMBL
PROSITE	UBIQUITIN_CONJUGAT_2	UniProtKB/TrEMBL
SMART	UBCc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54495	UniProtKB/TrEMBL
UniProt	A0A0D9S5D7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar