DDX39B (DExD-box helicase 39B) - Rat Genome Database

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Gene: DDX39B (DExD-box helicase 39B) Chlorocebus sabaeus
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Symbol: DDX39B
Name: DExD-box helicase 39B
RGD ID: 18616637
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN liver development (ortholog); positive regulation of cell growth involved in cardiac muscle cell development (ortholog); positive regulation of DNA biosynthetic process (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; spliceosome pathway; ASSOCIATED WITH megacolon (ortholog); Neurodevelopmental Disorders (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN nuclear matrix (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DEAD-box helicase 39B; spliceosome RNA helicase DDX39B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,445,258 - 40,457,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,447,061 - 40,456,826 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,430,956 - 31,442,672 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DDX39B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,445,258 - 40,457,379 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,447,061 - 40,456,826 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604431,430,956 - 31,442,672 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DDX39B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,530,226 - 31,542,003 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,530,219 - 31,542,448 (-)EnsemblGRCh38hg38GRCh38
GRCh37631,498,003 - 31,509,780 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,605,975 - 31,618,204 (-)NCBINCBI36Build 36hg18NCBI36
Build 34631,605,974 - 31,617,904NCBI
Celera633,096,234 - 33,108,459 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,284,705 - 31,296,997 (-)NCBIHuRef
CHM1_1631,500,137 - 31,512,390 (-)NCBICHM1_1
T2T-CHM13v2.0631,383,322 - 31,395,095 (-)NCBIT2T-CHM13v2.0
Ddx39b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,460,722 - 35,472,683 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,460,722 - 35,472,683 (+)EnsemblGRCm39 Ensembl
GRCm381735,241,746 - 35,253,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,241,746 - 35,253,707 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,378,691 - 35,390,652 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,355,767 - 34,367,554 (+)NCBIMGSCv36mm8
MGSCv361734,849,922 - 34,861,736 (+)NCBIMGSCv36mm8
Celera1738,343,889 - 38,346,696 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.6NCBI
Ddx39b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,577,200 - 3,589,651 (-)NCBIGRCr8
mRatBN7.2203,547,702 - 3,585,064 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,572,056 - 3,584,996 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx204,272,550 - 4,284,961 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,634,613 - 3,647,024 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,172,085 - 4,184,507 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0204,806,103 - 4,818,600 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,806,108 - 4,818,568 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,886,503 - 6,898,979 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,611,128 - 3,623,578 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1203,611,355 - 3,623,754 (-)NCBI
Celera204,440,470 - 4,452,912 (+)NCBICelera
Cytogenetic Map20p12NCBI
Ddx39b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543772,835 - 84,384 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543772,835 - 84,045 (-)NCBIChiLan1.0ChiLan1.0
DDX39B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,007,204 - 46,019,088 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1641,968,724 - 41,980,648 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,191,333 - 31,203,246 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,081,210 - 32,093,135 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,081,210 - 32,092,569 (-)Ensemblpanpan1.1panPan2
DDX39B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,032,377 - 1,044,465 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,032,368 - 1,044,492 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,169,048 - 1,179,440 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0121,177,608 - 1,189,705 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,176,147 - 1,190,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,036,642 - 1,047,031 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,104,617 - 1,114,937 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,171,204 - 1,181,685 (-)NCBIUU_Cfam_GSD_1.0
Ddx39b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,580,562 - 35,597,123 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,968,094 - 1,980,785 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,968,032 - 1,980,789 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX39B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,658,088 - 23,670,031 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,658,089 - 23,669,095 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,582,945 - 27,593,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Ddx39b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,657,914 - 24,667,579 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,657,019 - 24,667,225 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006567   ⟹   ENSCSAP00000004768
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1740,447,061 - 40,456,826 (+)Ensembl
RefSeq Acc Id: XM_007973138   ⟹   XP_007971329
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11740,445,258 - 40,457,379 (+)NCBI
Vero_WHO_p1.0NW_02366604431,430,956 - 31,442,672 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007971329 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004768.1
RefSeq Acc Id: XP_007971329   ⟸   XM_007973138
- UniProtKB: A0A0D9R829 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000004768   ⟸   ENSCSAT00000006567


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008517 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006567.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/TrEMBL
NCBI Gene DDX39B ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE DBP3 UniProtKB/TrEMBL
  SPLICEOSOME RNA HELICASE DDX39B UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0D9R829 ENTREZGENE, UniProtKB/TrEMBL