TTC8 (tetratricopeptide repeat domain 8)

Gene: TTC8 (tetratricopeptide repeat domain 8) Chlorocebus sabaeus

Analyze

Symbol:

TTC8

Name:

tetratricopeptide repeat domain 8

RGD ID:

18614892

Description:

ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (inferred); INVOLVED IN axon guidance (ortholog); camera-type eye photoreceptor cell differentiation (ortholog); cilium assembly (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 8 (ortholog); fundus dystrophy (ortholog); FOUND IN BBSome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tetratricopeptide repeat protein 8

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	66,483,808 - 66,539,717 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	66,483,864 - 66,539,142 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	53,829,890 - 53,884,739 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bardet-Biedl syndrome (ISO)

Bardet-Biedl syndrome 8 (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Leber congenital amaurosis 3 (ISO)

macular degeneration (ISO)

retinal degeneration (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 51 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IEA,ISO)

camera-type eye photoreceptor cell differentiation (IEA,ISO)

cilium assembly (IEA,ISO)

establishment of anatomical structure orientation (IEA)

establishment of epithelial cell apical/basal polarity (IEA,ISO)

establishment of planar polarity (IEA,ISO)

fat cell differentiation (IEA)

inner ear receptor cell stereocilium organization (IEA,ISO)

multi-ciliated epithelial cell differentiation (IEA,ISO)

multicellular organism growth (IEA,ISO)

non-motile cilium assembly (IEA)

olfactory bulb development (IEA,ISO)

protein localization to plasma membrane (IEA,ISO)

regulation of protein localization (IEA,ISO)

regulation of stress fiber assembly (IEA,ISO)

renal tubule development (IEA,ISO)

sensory perception of smell (IEA,ISO)

Cellular Component

BBSome (IEA,ISO)

centrosome (IEA)

ciliary basal body (IEA)

ciliary membrane (IEA)

cilium (IEA)

membrane (IEA)

non-motile cilium (IEA)

photoreceptor connecting cilium (IEA)

Molecular Function

protein binding (ISO)

RNA polymerase II-specific DNA-binding transcription factor binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TTC8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	66,483,808 - 66,539,717 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	66,483,864 - 66,539,142 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	53,829,890 - 53,884,739 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TTC8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	88,824,153 - 88,881,079 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	88,824,153 - 88,881,078 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	89,290,497 - 89,347,423 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	88,360,731 - 88,414,088 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	88,360,730 - 88,414,087	NCBI
Celera	14	69,339,325 - 69,392,681 (+)	NCBI		Celera
Cytogenetic Map	14	q31.3	NCBI
HuRef	14	69,465,840 - 69,519,171 (+)	NCBI		HuRef
CHM1_1	14	89,228,786 - 89,282,145 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	83,047,758 - 83,104,682 (+)	NCBI		T2T-CHM13v2.0

Ttc8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	98,886,796 - 98,949,509 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	98,886,833 - 98,949,497 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	98,920,537 - 98,983,250 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	98,920,574 - 98,983,238 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	100,158,784 - 100,221,448 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	99,321,639 - 99,384,288 (+)	NCBI		MGSCv36	mm8
Celera	12	100,146,253 - 100,210,179 (+)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	49.88	NCBI

Ttc8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	123,927,657 - 124,025,354 (+)	NCBI		GRCr8
mRatBN7.2	6	118,198,186 - 118,252,422 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	118,198,201 - 118,252,418 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	118,348,070 - 118,402,289 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	118,644,871 - 118,699,091 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	117,979,722 - 118,033,939 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	122,920,308 - 122,974,525 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	122,920,317 - 122,974,522 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	132,140,808 - 132,207,306 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	123,117,534 - 123,171,840 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	123,121,373 - 123,174,881 (+)	NCBI
Celera	6	115,755,975 - 115,810,232 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

Ttc8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	11,409,982 - 11,466,523 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	11,410,196 - 11,466,044 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTC8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	89,967,618 - 90,027,137 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	89,187,209 - 89,243,644 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	69,446,355 - 69,502,351 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	88,802,812 - 88,857,055 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	88,802,812 - 88,857,055 (+)	Ensembl	panpan1.1		panPan2

TTC8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	60,061,670 - 60,115,464 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	60,061,732 - 60,115,075 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	59,641,066 - 59,693,906 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	60,332,658 - 60,386,187 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	60,332,402 - 60,386,190 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	60,013,742 - 60,066,541 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	60,063,485 - 60,116,262 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	60,391,356 - 60,444,177 (+)	NCBI		UU_Cfam_GSD_1.0

Ttc8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	15,762,381 - 15,810,727 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	16,258,058 - 16,306,589 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	16,258,247 - 16,306,077 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	110,731,731 - 110,784,853 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	110,731,729 - 110,783,999 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	117,222,186 - 117,274,088 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Ttc8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	13,437,221 - 13,497,510 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	13,437,234 - 13,497,269 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36		60
Low		16
Below cutoff		4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007987547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007987548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007987549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007987550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000009605 ⟹ ENSCSAP00000007717

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	24	66,483,864 - 66,539,142 (+)	Ensembl

RefSeq Acc Id:

XM_007987547 ⟹ XP_007985738

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	24	66,483,815 - 66,539,717 (+)	NCBI
Vero_WHO_p1.0	NW_023666053	53,829,890 - 53,884,734 (+)	NCBI

Sequence:

show sequence

CGGGCAGAGCCTGACGCCGCCAGCTCCTCGCTCCCCGCCCACCGCTCTCCTAGAGCGCTGGGCC
TTCGCTGGCCGCACCGGCAGTCATGGGCTCGGAGATGGAGCCGCTGCTCCTGGCCTGGAGCTAT
TTTAGGCGCAGGAAGTTCCAGCTCTGCGCCGATCTGTGCACGCAGATGCTGGAGAAGTCCCCTT
ATGACCAGGAACCAGATCCTGAATTGCCAGTGCATCAGGCAGCTTGGATCTTAAAAGCAAGAGC
ACTAACAGAAATGGTGTACATAGATGAAATTGATGTAGCTCAGGAGGGAATTGCAGAAATGATG
CTGGATGAAAATGCTATTGCTCAAGTTCCACGCCCTGGAACGTCTTTGAAACTCCCTGGAACTA
ATCAGACAGGAGGGCCTAGTCAGGCCGTTAGGCCAATCACACAAGCTGGAAGACCCATTACAGG
TTTCCTCAGGCCCAACACACAGAGTGGAAGGCCAGGCACTATGGAACAGGCCATCAGAACCCCC
AGAACCGCCTACACAGCCCGCCCTATCACCAGCTCCTCCGGAAGATTTGTCAGGCTGGGAACGG
CTTCCATGCTTACAAGTCCTGATGGACCATTTATAAATTTATCTAGACTGAATTTAACAAAATA
TTCCCAGAAACCTAAGTTGGCAAAGGCTTTGTTTGAGTATATCTTTCATCATGAAAATGATGTT
AAGACTGCTTTGGATCTGGCTGCCCTCTCCACAGAGCATTCTCAGTACAAGGACTGGTGGTGGA
AGGTACAGATTGGAAAATGTTACTACAGGTTGGGAATGTATCGTGAAGCAGAAAAACAGTTTAA
ATCAGCCCTGAAGCAGCAGGAAATGGTAGATACATTTCTGTACTTGGCAAAAGTTTATGTCTCA
TTGGATCAACCTGTGACTGCTTTAAATCTTTTCAAACAAGGCTTAGATAAGTTTCCAGGAGAAG
TAACTCTGCTCTGTGGAATTGCAAGAATCTATGAGGAAATGAACAATATGTCATCAGCAGCCGA
ATACTACAAAGAAGTTTTGAAACAAGACAATACTCATGTGGAAGCCATCGCATGCATTGGAAGC
AACCACTTCTATTCTGATCAGCCAGAAATAGCTCTCCGGTTTTACAGGCGACTGCTGCAGATGG
GCATTTATAACGGCCAGCTTTTTAACAATCTGGGGCTGTGTTGCTTCTATGCCCAGCAGTATGA
TATGACTCTGACCTCATTTGAACGTGCCCTTTCTTTGGCTGAAAATGAAGAAGAGGCAGCTGAT
GTCTGGTACAACTTGGGACATGTAGCTGTGGGAATAGGAGATACCAATTTGGCCCATCAGTGCT
TCAGGCTGGCTCTGGTCAACAACAACCACCACGCCGAGGCCTACAACAACCTGGCTGTGCTGGA
GATGCGGAAGGGCCACGTTGAACAGGCAAGGGCACTATTACAAACTGCATCATCTCTAGCACCT
CATATGTATGAACCGCATTTTAATTTTGCAACAATCTCTGATAAGATTGGAGATCTGCAGAGAA
GCTATGTTGCTGCACAGAAGTCTGAAGCAGCATTTCCAGACCACGTGGACACACAACATTTAAT
TAAACAATTAAGGCAGCATTTTGCTATGCTCTGATTGTTCCTGAGACCACATATGTTCTTATGA
AGAGGCATTATGCAAGGGGAAAGAAGTACTATGTCTGTGTATGTATGTATATAGTGTAATACAT
ATATTTTACAAGCTTGTCCTTGATATTAGTGAAGGTGATATATAAGGGTGACACAGAATGTATA
ATGCAAATTTCATAGTAATAGTAACTTCATAAAATAATATAAAATACGGGATTTAAACCTTTCT
AAATAGATCATGAAACTTTCTCCCACATTATATAGTAGATGTTTGTTTATAATGTTTACAAAAC
ATTTTGGTGAATTCCCTCAATGTTTTAAAAATGTACATTTTTTAAGTACTTAAGCTGACTATTA
GCCATCATGTAGCTTAAGGAGTCTGAAATCTGCCATTAAAACTGCACCTTTAAGCTAGGTGTAG
TAGCATGTGCCTATAGTCCCAGCTACTTGGGAGGTGGAGGTGGGAGGATTATAAATAAGACTTT
CCTTTAGACTTTAAAAATGTATTTAAAACTATTTTTATTAAATACTTTGTGATTTCCTATTAAG
TTTTAAAATAAATCAGTGTGTATAACACCATCA

hide sequence

RefSeq Acc Id:

XM_007987548 ⟹ XP_007985739

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	24	66,483,816 - 66,539,717 (+)	NCBI
Vero_WHO_p1.0	NW_023666053	53,829,890 - 53,884,739 (+)	NCBI

Sequence:

show sequence

GGGCAGAGCCTGACGCCGCCAGCTCCTCGCTCCCCGCCCACCGCTCTCCTAGAGCGCTGGGCCT
TCGCTGGCCGCACCGGCAGTCATGGGCTCGGAGATGGAGCCGCTGCTCCTGGCCTGGAGCTATT
TTAGGCGCAGGAAGTTCCAGCTCTGCGCCGATCTGTGCACGCAGATGCTGGAGAAGTCCCCTTA
TGACCAGGCAGCTTGGATCTTAAAAGCAAGAGCACTAACAGAAATGGTGTACATAGATGAAATT
GATGTAGCTCAGGAGGGAATTGCAGAAATGATGCTGGATGAAAATGCTATTGCTCAAGTTCCAC
GCCCTGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACAGGAGGGCCTAGTCAGGCCGTTAG
GCCAATCACACAAGCTGGAAGACCCATTACAGGTTTCCTCAGGCCCAACACACAGAGTGGAAGG
CCAGGCACTATGGAACAGGCCATCAGAACCCCCAGAACCGCCTACACAGCCCGCCCTATCACCA
GCTCCTCCGGAAGATTTGTCAGGCTGGGAACGGCTTCCATGCTTACAAGTCCTGATGGACCATT
TATAAATTTATCTAGACTGAATTTAACAAAATATTCCCAGAAACCTAAGTTGGCAAAGGCTTTG
TTTGAGTATATCTTTCATCATGAAAATGATGTTAAGACTGCTTTGGATCTGGCTGCCCTCTCCA
CAGAGCATTCTCAGTACAAGGACTGGTGGTGGAAGGTACAGATTGGAAAATGTTACTACAGGTT
GGGAATGTATCGTGAAGCAGAAAAACAGTTTAAATCAGCCCTGAAGCAGCAGGAAATGGTAGAT
ACATTTCTGTACTTGGCAAAAGTTTATGTCTCATTGGATCAACCTGTGACTGCTTTAAATCTTT
TCAAACAAGGCTTAGATAAGTTTCCAGGAGAAGTAACTCTGCTCTGTGGAATTGCAAGAATCTA
TGAGGAAATGAACAATATGTCATCAGCAGCCGAATACTACAAAGAAGTTTTGAAACAAGACAAT
ACTCATGTGGAAGCCATCGCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGAAATAG
CTCTCCGGTTTTACAGGCGACTGCTGCAGATGGGCATTTATAACGGCCAGCTTTTTAACAATCT
GGGGCTGTGTTGCTTCTATGCCCAGCAGTATGATATGACTCTGACCTCATTTGAACGTGCCCTT
TCTTTGGCTGAAAATGAAGAAGAGGCAGCTGATGTCTGGTACAACTTGGGACATGTAGCTGTGG
GAATAGGAGATACCAATTTGGCCCATCAGTGCTTCAGGCTGGCTCTGGTCAACAACAACCACCA
CGCCGAGGCCTACAACAACCTGGCTGTGCTGGAGATGCGGAAGGGCCACGTTGAACAGGCAAGG
GCACTATTACAAACTGCATCATCTCTAGCACCTCATATGTATGAACCGCATTTTAATTTTGCAA
CAATCTCTGATAAGATTGGAGATCTGCAGAGAAGCTATGTTGCTGCACAGAAGTCTGAAGCAGC
ATTTCCAGACCACGTGGACACACAACATTTAATTAAACAATTAAGGCAGCATTTTGCTATGCTC
TGATTGTTCCTGAGACCACATATGTTCTTATGAAGAGGCATTATGCAAGGGGAAAGAAGTACTA
TGTCTGTGTATGTATGTATATAGTGTAATACATATATTTTACAAGCTTGTCCTTGATATTAGTG
AAGGTGATATATAAGGGTGACACAGAATGTATAATGCAAATTTCATAGTAATAGTAACTTCATA
AAATAATATAAAATACGGGATTTAAACCTTTCTAAATAGATCATGAAACTTTCTCCCACATTAT
ATAGTAGATGTTTGTTTATAATGTTTACAAAACATTTTGGTGAATTCCCTCAATGTTTTAAAAA
TGTACATTTTTTAAGTACTTAAGCTGACTATTAGCCATCATGTAGCTTAAGGAGTCTGAAATCT
GCCATTAAAACTGCACCTTTAAGCTAGGTGTAGTAGCATGTGCCTATAGTCCCAGCTACTTGGG
AGGTGGAGGTGGGAGGATTATAAATAAGACTTTCCTTTAGACTTTAAAAATGTATTTAAAACTA
TTTTTATTAAATACTTTGTGATTTCCTATTAAGTTTTAAAATAAATCAGTGTGTATAACACCAT
CA

hide sequence

RefSeq Acc Id:

XM_007987549 ⟹ XP_007985740

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	24	66,483,808 - 66,539,714 (+)	NCBI
Vero_WHO_p1.0	NW_023666053	53,829,890 - 53,884,734 (+)	NCBI

Sequence:

show sequence

GGGTTGCCGGGCAGAGCCTGACGCCGCCAGCTCCTCGCTCCCCGCCCACCGCTCTCCTAGAGCG
CTGGGCCTTCGCTGGCCGCACCGGCAGTCATGGGCTCGGAGATGGAGCCGCTGCTCCTGGCCTG
GAGCTATTTTAGGCGCAGGAAGTTCCAGCTCTGCGCCGATCTGTGCACGCAGATGCTGGAGAAG
TCCCCTTATGACCAGGAACCAGATCCTGAATTGCCAGTGCATCAGGCAGCTTGGATCTTAAAAG
CAAGAGCACTAACAGAAATGGTGTACATAGATGAAATTGATGTAGCTCAGGAGGGAATTGCAGA
AATGATGCTGGATGAAAATGCTATTGCTCAAGTTCCACGCCCTGGAACGTCTTTGAAACTCCCT
GGAACTAATCAGACAGGAGGGCCTAGTCAGGCCGTTAGGCCAATCACACAAGCTGGAAGACCCA
TTACAGGTTTCCTCAGGCCCAACACACAGAGTGGAAGGCCAGGCACTATGGAACAGGCCATCAG
AACCCCCAGAACCGCCTACACAGCCCGCCCTATCACCAGCTCCTCCGGAAGATTTGTCAGGCTG
GGAACGGCTTCCATGCTTACAAGTCCTGATGGACCATTTATAAATTTATCTAGACTGAATTTAA
CAAAATATTCCCAGAAACCTAAGTTGGCAAAGGCTTTGTTTGAGTATATCTTTCATCATGAAAA
TGATGTTAAGACTATTCATCTTGAGGATGTAGTTCTACATCTTGGAATTTACCCATCCTTTTTG
AGGAATAAAAATCACATTGAAAAAAATGCTTTGGATCTGGCTGCCCTCTCCACAGAGCATTCTC
AGTACAAGGACTGGTGGTGGAAGGTACAGATTGGAAAATGTTACTACAGGTTGGGAATGTATCG
TGAAGCAGAAAAACAGTTTAAATCAGCCCTGAAGCAGCAGGAAATGGTAGATACATTTCTGTAC
TTGGCAAAAGTTTATGTCTCATTGGATCAACCTGTGACTGCTTTAAATCTTTTCAAACAAGGCT
TAGATAAGTTTCCAGGAGAAGTAACTCTGCTCTGTGGAATTGCAAGAATCTATGAGGAAATGAA
CAATATGTCATCAGCAGCCGAATACTACAAAGAAGTTTTGAAACAAGACAATACTCATGTGGAA
GCCATCGCATGCATTGGAAGCAACCACTTCTATTCTGATCAGCCAGAAATAGCTCTCCGGTTTT
ACAGGCGACTGCTGCAGATGGGCATTTATAACGGCCAGCTTTTTAACAATCTGGGGCTGTGTTG
CTTCTATGCCCAGCAGTATGATATGACTCTGACCTCATTTGAACGTGCCCTTTCTTTGGCTGAA
AATGAAGAAGAGGCAGCTGATGTCTGGTACAACTTGGGACATGTAGCTGTGGGAATAGGAGATA
CCAATTTGGCCCATCAGTGCTTCAGGCTGGCTCTGGTCAACAACAACCACCACGCCGAGGCCTA
CAACAACCTGGCTGTGCTGGAGATGCGGAAGGGCCACGTTGAACAGGCAAGGGCACTATTACAA
ACTGCATCATCTCTAGCACCTCATATGTATGAACCGCATTTTAATTTTGCAACAATCTCTGATA
AGATTGGAGATCTGCAGAGAAGCTATGTTGCTGCACAGAAGTCTGAAGCAGCATTTCCAGACCA
CGTGGACACACAACATTTAATTAAACAATTAAGGCAGCATTTTGCTATGCTCTGATTGTTCCTG
AGACCACATATGTTCTTATGAAGAGGCATTATGCAAGGGGAAAGAAGTACTATGTCTGTGTATG
TATGTATATAGTGTAATACATATATTTTACAAGCTTGTCCTTGATATTAGTGAAGGTGATATAT
AAGGGTGACACAGAATGTATAATGCAAATTTCATAGTAATAGTAACTTCATAAAATAATATAAA
ATACGGGATTTAAACCTTTCTAAATAGATCATGAAACTTTCTCCCACATTATATAGTAGATGTT
TGTTTATAATGTTTACAAAACATTTTGGTGAATTCCCTCAATGTTTTAAAAATGTACATTTTTT
AAGTACTTAAGCTGACTATTAGCCATCATGTAGCTTAAGGAGTCTGAAATCTGCCATTAAAACT
GCACCTTTAAGCTAGGTGTAGTAGCATGTGCCTATAGTCCCAGCTACTTGGGAGGTGGAGGTGG
GAGGATTATAAATAAGACTTTCCTTTAGACTTTAAAAATGTATTTAAAACTATTTTTATTAAAT
ACTTTGTGATTTCCTATTAAGTTTTAAAATAAATCAGTGTGTATAACACCA

hide sequence

RefSeq Acc Id:

XM_007987550 ⟹ XP_007985741

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	24	66,483,812 - 66,539,714 (+)	NCBI
Vero_WHO_p1.0	NW_023666053	53,829,890 - 53,884,734 (+)	NCBI

Sequence:

show sequence

TGCCGGGCAGAGCCTGACGCCGCCAGCTCCTCGCTCCCCGCCCACCGCTCTCCTAGAGCGCTGG
GCCTTCGCTGGCCGCACCGGCAGTCATGGGCTCGGAGATGGAGCCGCTGCTCCTGGCCTGGAGC
TATTTTAGGCGCAGGAAGTTCCAGCTCTGCGCCGATCTGTGCACGCAGATGCTGGAGAAGTCCC
CTTATGACCAGGCAGCTTGGATCTTAAAAGCAAGAGCACTAACAGAAATGGTGTACATAGATGA
AATTGATGTAGCTCAGGAGGGAATTGCAGAAATGATGCTGGATGAAAATGCTATTGCTCAAGTT
CCACGCCCTGGAACGTCTTTGAAACTCCCTGGAACTAATCAGACAGGAGGGCCTAGTCAGGCCG
TTAGGCCAATCACACAAGCTGGAAGACCCATTACAGGTTTCCTCAGGCCCAACACACAGAGTGG
AAGGCCAGGCACTATGGAACAGGCCATCAGAACCCCCAGAACCGCCTACACAGCCCGCCCTATC
ACCAGCTCCTCCGGAAGATTTGTCAGGCTGGGAACGGCTTCCATGCTTACAAGTCCTGATGGAC
CATTTATAAATTTATCTAGACTGAATTTAACAAAATATTCCCAGAAACCTAAGTTGGCAAAGGC
TTTGTTTGAGTATATCTTTCATCATGAAAATGATGTTAAGACTATTCATCTTGAGGATGTAGTT
CTACATCTTGGAATTTACCCATCCTTTTTGAGGAATAAAAATCACATTGAAAAAAATGCTTTGG
ATCTGGCTGCCCTCTCCACAGAGCATTCTCAGTACAAGGACTGGTGGTGGAAGGTACAGATTGG
AAAATGTTACTACAGGTTGGGAATGTATCGTGAAGCAGAAAAACAGTTTAAATCAGCCCTGAAG
CAGCAGGAAATGGTAGATACATTTCTGTACTTGGCAAAAGTTTATGTCTCATTGGATCAACCTG
TGACTGCTTTAAATCTTTTCAAACAAGGCTTAGATAAGTTTCCAGGAGAAGTAACTCTGCTCTG
TGGAATTGCAAGAATCTATGAGGAAATGAACAATATGTCATCAGCAGCCGAATACTACAAAGAA
GTTTTGAAACAAGACAATACTCATGTGGAAGCCATCGCATGCATTGGAAGCAACCACTTCTATT
CTGATCAGCCAGAAATAGCTCTCCGGTTTTACAGGCGACTGCTGCAGATGGGCATTTATAACGG
CCAGCTTTTTAACAATCTGGGGCTGTGTTGCTTCTATGCCCAGCAGTATGATATGACTCTGACC
TCATTTGAACGTGCCCTTTCTTTGGCTGAAAATGAAGAAGAGGCAGCTGATGTCTGGTACAACT
TGGGACATGTAGCTGTGGGAATAGGAGATACCAATTTGGCCCATCAGTGCTTCAGGCTGGCTCT
GGTCAACAACAACCACCACGCCGAGGCCTACAACAACCTGGCTGTGCTGGAGATGCGGAAGGGC
CACGTTGAACAGGCAAGGGCACTATTACAAACTGCATCATCTCTAGCACCTCATATGTATGAAC
CGCATTTTAATTTTGCAACAATCTCTGATAAGATTGGAGATCTGCAGAGAAGCTATGTTGCTGC
ACAGAAGTCTGAAGCAGCATTTCCAGACCACGTGGACACACAACATTTAATTAAACAATTAAGG
CAGCATTTTGCTATGCTCTGATTGTTCCTGAGACCACATATGTTCTTATGAAGAGGCATTATGC
AAGGGGAAAGAAGTACTATGTCTGTGTATGTATGTATATAGTGTAATACATATATTTTACAAGC
TTGTCCTTGATATTAGTGAAGGTGATATATAAGGGTGACACAGAATGTATAATGCAAATTTCAT
AGTAATAGTAACTTCATAAAATAATATAAAATACGGGATTTAAACCTTTCTAAATAGATCATGA
AACTTTCTCCCACATTATATAGTAGATGTTTGTTTATAATGTTTACAAAACATTTTGGTGAATT
CCCTCAATGTTTTAAAAATGTACATTTTTTAAGTACTTAAGCTGACTATTAGCCATCATGTAGC
TTAAGGAGTCTGAAATCTGCCATTAAAACTGCACCTTTAAGCTAGGTGTAGTAGCATGTGCCTA
TAGTCCCAGCTACTTGGGAGGTGGAGGTGGGAGGATTATAAATAAGACTTTCCTTTAGACTTTA
AAAATGTATTTAAAACTATTTTTATTAAATACTTTGTGATTTCCTATTAAGTTTTAAAATAAAT
CAGTGTGTATAACACCA

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Protein Sequences


Protein RefSeqs	XP_007985738	(Get FASTA)	NCBI Sequence Viewer
	XP_007985739	(Get FASTA)	NCBI Sequence Viewer
	XP_007985740	(Get FASTA)	NCBI Sequence Viewer
	XP_007985741	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000007717
	ENSCSAP00000007717.1

RefSeq Acc Id:	XP_007985740 ⟸ XM_007987549
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_007985741 ⟸ XM_007987550
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_007985738 ⟸ XM_007987547
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RGH8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007985739 ⟸ XM_007987548
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSCSAP00000007717 ⟸ ENSCSAT00000009605

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000011521	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000009605.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	BBS8	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
KEGG Report	csab:103229504	UniProtKB/TrEMBL
NCBI Gene	TTC8	ENTREZGENE
PANTHER	PTHR44177	UniProtKB/TrEMBL
	TETRATRICOPEPTIDE REPEAT PROTEIN 8	UniProtKB/TrEMBL
Pfam	TPR_16	UniProtKB/TrEMBL
	TPR_8	UniProtKB/TrEMBL
PROSITE	TPR	UniProtKB/TrEMBL
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A0D9RGH8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIA

Imported Disease Annotations - OMIM