ZNF446 (zinc finger protein 446) - Rat Genome Database

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Gene: ZNF446 (zinc finger protein 446) Chlorocebus sabaeus
Analyze
Symbol: ZNF446
Name: zinc finger protein 446
RGD ID: 18611571
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog); High Myopia (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,758,513 - 50,767,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl650,762,020 - 50,768,491 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660454,061,029 - 4,070,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF446
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,758,513 - 50,767,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl650,762,020 - 50,768,491 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660454,061,029 - 4,070,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ZNF446
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,476,352 - 58,489,533 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1958,474,017 - 58,481,230 (+)EnsemblGRCh38hg38GRCh38
GRCh371958,987,719 - 59,000,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,679,607 - 63,684,409 (+)NCBINCBI36Build 36hg18NCBI36
Celera1956,031,803 - 56,036,605 (+)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1955,296,743 - 55,301,545 (+)NCBIHuRef
CHM1_11958,981,658 - 58,986,460 (+)NCBICHM1_1
T2T-CHM13v2.01961,572,319 - 61,585,623 (+)NCBIT2T-CHM13v2.0
Zfp446
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,711,726 - 12,718,323 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,711,775 - 12,719,641 (+)EnsemblGRCm39 Ensembl
GRCm38712,976,196 - 12,985,717 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,977,848 - 12,985,714 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,563,197 - 13,571,065 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,878,027 - 11,884,488 (+)NCBIMGSCv36mm8
Celera710,602,035 - 10,611,243 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.71NCBI
Zfp446
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,673,920 - 82,680,414 (+)NCBIGRCr8
mRatBN7.2173,594,953 - 73,612,685 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,601,759 - 73,612,685 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0165,595,518 - 65,608,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,590,404 - 65,612,490 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0166,406,751 - 66,419,912 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera160,231,096 - 60,244,335 (-)NCBICelera
Cytogenetic Map1q21NCBI
Znf446
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,104,102 - 1,106,765 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555841,102,597 - 1,107,177 (+)NCBIChiLan1.0ChiLan1.0
ZNF446
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,746,365 - 64,753,035 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,533,396 - 66,540,910 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01955,477,760 - 55,485,258 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11964,304,738 - 64,310,095 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,304,385 - 64,310,095 (+)Ensemblpanpan1.1panPan2
ZNF446
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,440,651 - 99,446,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,441,720 - 99,454,958 (-)EnsemblCanFam3.1canFam3CanFam3.1
Znf446
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118218,036,452 - 218,047,663 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493706271,926 - 83,014 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF446
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,048,075 - 63,056,530 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,049,401 - 63,066,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Znf446
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462483298,176 - 100,840 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462483297,276 - 105,169 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 9 20
Low 27 19 40
Below cutoff 1

Sequence


RefSeq Acc Id: ENSCSAT00000016937   ⟹   ENSCSAP00000016432
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl650,762,020 - 50,768,491 (+)Ensembl
RefSeq Acc Id: XM_007998436   ⟹   XP_007996627
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,761,828 - 50,767,024 (+)NCBI
Vero_WHO_p1.0NW_0236660454,061,036 - 4,070,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007998437   ⟹   XP_007996628
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,761,922 - 50,767,024 (+)NCBI
Vero_WHO_p1.0NW_0236660454,065,687 - 4,070,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007998438   ⟹   XP_007996629
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,761,922 - 50,767,024 (+)NCBI
Vero_WHO_p1.0NW_0236660454,065,820 - 4,070,846 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007998439   ⟹   XP_007996630
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1650,758,542 - 50,767,024 (+)NCBI
Vero_WHO_p1.0NW_0236660454,061,029 - 4,070,846 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007996627 (Get FASTA)   NCBI Sequence Viewer  
  XP_007996628 (Get FASTA)   NCBI Sequence Viewer  
  XP_007996629 (Get FASTA)   NCBI Sequence Viewer  
  XP_007996630 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016432.1
RefSeq Acc Id: XP_007996630   ⟸   XM_007998439
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007996627   ⟸   XM_007998436
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S6E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007996628   ⟸   XM_007998437
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S6E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007996629   ⟸   XM_007998438
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S6E3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000016432   ⟸   ENSCSAT00000016937


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001593 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016937.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF446 ENTREZGENE
PANTHER PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN BOX DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9S6E3 ENTREZGENE, UniProtKB/TrEMBL