LOC103231905 (sperm acrosome-associated protein 5) - Rat Genome Database

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Gene: LOC103231905 (sperm acrosome-associated protein 5) Chlorocebus sabaeus
Analyze
Symbol: LOC103231905
Name: sperm acrosome-associated protein 5
RGD ID: 18611155
Description: ENCODES a protein that exhibits lysozyme activity (inferred); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (inferred); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog); FOUND IN acrosomal vesicle (inferred); sperm flagellum (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SPACA5; sperm acrosome associated 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,170,226 - 45,175,615 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607610,436,318 - 10,441,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC103231905
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X45,170,226 - 45,175,615 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607610,436,318 - 10,441,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SPACA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,004,336 - 48,009,733 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,004,336 - 48,009,733 (+)EnsemblGRCh38hg38GRCh38
GRCh37X47,863,734 - 47,869,130 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X47,748,678 - 47,754,074 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX52,182,559 - 52,187,955 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX45,698,884 - 45,704,280 (+)NCBIHuRef
CHM1_1X47,894,879 - 47,900,324 (+)NCBICHM1_1
T2T-CHM13v2.0X47,414,513 - 47,419,909 (+)NCBIT2T-CHM13v2.0
Spaca5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X20,934,669 - 20,944,197 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX20,934,645 - 20,944,202 (+)EnsemblGRCm39 Ensembl
GRCm38X21,068,430 - 21,077,958 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX21,068,406 - 21,077,963 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X20,645,532 - 20,655,089 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X20,225,447 - 20,234,847 (+)NCBIMGSCv36mm8
CeleraX19,202,482 - 19,211,886 (+)NCBICelera
Cytogenetic MapXA1.3NCBI
cM MapX16.59NCBI
Spaca5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X3,472,369 - 3,475,552 (-)NCBIGRCr8
mRatBN7.2X918,817 - 922,000 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX918,817 - 922,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX946,948 - 950,132 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X4,422,640 - 4,425,824 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X743,174 - 746,359 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X912,770 - 915,953 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX912,770 - 915,953 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X907,618 - 910,801 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX1,488,462 - 1,491,645 (-)NCBICelera
Cytogenetic MapXq11NCBI
Spaca5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955516103,674 - 106,082 (-)NCBIChiLan1.0ChiLan1.0
SPACA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X49,628,747 - 49,631,850 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X49,632,342 - 49,635,222 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X40,435,554 - 40,441,190 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X48,328,726 - 48,334,106 (+)NCBIpanpan1.1PanPan1.1panPan2
ZNF81
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X41,590,329 - 41,612,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX41,353,440 - 41,593,082 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX15,968,120 - 15,989,904 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X41,727,776 - 41,749,559 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX41,727,802 - 41,731,591 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X41,715,021 - 41,736,798 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X41,703,102 - 41,724,897 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X41,796,676 - 41,818,457 (+)NCBIUU_Cfam_GSD_1.0
SPACA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,476,587 - 42,478,921 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,476,719 - 42,478,783 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,046,163 - 47,048,227 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 33 16 58
Below cutoff 3 2 2

Sequence


Reference Sequences
RefSeq Acc Id: XM_007991551   ⟹   XP_007989742
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X45,171,849 - 45,175,615 (+)NCBI
Vero_WHO_p1.0NW_02366607610,436,318 - 10,441,371 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007989742 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000009728
  ENSCSAP00000009728.1
Reference Protein Sequences
RefSeq Acc Id: XP_007989742   ⟸   XM_007991551
- UniProtKB: A0A0D9RM89 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013573 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000011661.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.530.10 UniProtKB/TrEMBL
InterPro Glyco_hydro_22 UniProtKB/TrEMBL
  Glyco_hydro_22_lys UniProtKB/TrEMBL
  Lysozyme-like_dom_sf UniProtKB/TrEMBL
KEGG Report csab:103231905 UniProtKB/TrEMBL
NCBI Gene SPACA5 ENTREZGENE
PANTHER PTHR11407 UniProtKB/TrEMBL
  PTHR11407:SF31 UniProtKB/TrEMBL
Pfam Lys UniProtKB/TrEMBL
PRINTS LYSOZYME UniProtKB/TrEMBL
  LYZLACT UniProtKB/TrEMBL
PROSITE GLYCOSYL_HYDROL_F22_2 UniProtKB/TrEMBL
SMART LYZ1 UniProtKB/TrEMBL
Superfamily-SCOP SSF53955 UniProtKB/TrEMBL
UniProt A0A0D9RM89 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103231905  sperm acrosome-associated protein 5  SPACA5  sperm acrosome associated 5  Symbol and/or name change 5135510 APPROVED