MAGEL2 (MAGE family member L2) - Rat Genome Database

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Gene: MAGEL2 (MAGE family member L2) Chlorocebus sabaeus
Analyze
Symbol: MAGEL2
Name: MAGE family member L2
RGD ID: 18610065
Description: ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN Arp2/3 complex-mediated actin nucleation (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of actin nucleation (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MAGE-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12657,975,936 - 57,980,492 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605440,979,010 - 40,983,470 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
endosome  (ISO)
nucleus  (ISO)
retromer complex  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAGEL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12657,975,936 - 57,980,492 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605440,979,010 - 40,983,470 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MAGEL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381523,643,549 - 23,647,867 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1523,643,549 - 23,647,867 (-)EnsemblGRCh38hg38GRCh38
GRCh371523,888,696 - 23,893,014 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361521,439,789 - 21,442,268 (-)NCBINCBI36Build 36hg18NCBI36
Build 341521,439,787 - 21,442,082NCBI
Celera152,049,600 - 2,053,898 (-)NCBICelera
Cytogenetic Map15q11.2NCBI
HuRef152,024,179 - 2,028,378 (-)NCBIHuRef
CHM1_11523,838,991 - 23,843,288 (-)NCBICHM1_1
T2T-CHM13v2.01521,377,970 - 21,382,288 (-)NCBIT2T-CHM13v2.0
Magel2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39762,026,727 - 62,031,388 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl762,026,758 - 62,031,388 (+)EnsemblGRCm39 Ensembl
GRCm38762,376,979 - 62,381,640 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl762,377,010 - 62,381,640 (+)EnsemblGRCm38mm10GRCm38
MGSCv37769,521,865 - 69,526,526 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36762,255,929 - 62,260,590 (+)NCBIMGSCv36mm8
MGSCv36751,738,184 - 51,742,845 (+)NCBIMGSCv36mm8
Cytogenetic Map7CNCBI
cM Map734.37NCBI
Magel2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81125,292,033 - 125,296,575 (+)NCBIGRCr8
mRatBN7.21115,880,142 - 115,884,684 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1115,880,474 - 115,884,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1123,827,027 - 123,831,569 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01131,009,526 - 131,014,068 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01123,835,273 - 123,839,815 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01123,015,404 - 123,019,945 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1123,015,746 - 123,019,522 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01124,153,036 - 124,157,563 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41116,625,779 - 116,629,840 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1108,150,946 - 108,155,487 (+)NCBICelera
Cytogenetic Map1q22NCBI
Magel2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541631,091,151 - 31,095,484 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541631,091,306 - 31,095,420 (-)NCBIChiLan1.0ChiLan1.0
MAGEL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21611,459,115 - 11,463,441 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11515,034,216 - 15,038,542 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0156,017,523 - 6,021,849 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11521,134,414 - 21,138,669 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1521,134,857 - 21,138,576 (-)Ensemblpanpan1.1panPan2
MAGEL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1336,362,021 - 36,366,326 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl336,363,930 - 36,365,870 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha339,029,381 - 39,033,531 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0336,752,449 - 36,756,599 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl336,752,479 - 36,756,611 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1336,257,544 - 36,261,691 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0336,520,865 - 36,525,015 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0336,665,224 - 36,669,374 (+)NCBIUU_Cfam_GSD_1.0
Magel2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640124,542,205 - 124,546,345 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936805882,273 - 886,475 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936805882,296 - 886,442 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAGEL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1142,448,689 - 142,454,697 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11142,450,414 - 142,454,633 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21158,313,180 - 158,317,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Magel2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624768613,243 - 618,303 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624768613,396 - 618,222 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008017381   ⟹   XP_008015572
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12657,975,936 - 57,980,492 (+)NCBI
Vero_WHO_p1.0NW_02366605440,979,010 - 40,983,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008017382   ⟹   XP_008015573
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12657,975,937 - 57,980,492 (+)NCBI
Vero_WHO_p1.0NW_02366605440,979,011 - 40,983,470 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008015572 (Get FASTA)   NCBI Sequence Viewer  
  XP_008015573 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_008015572   ⟸   XM_008017381
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008015573   ⟸   XM_008017382
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene MAGEL2 ENTREZGENE