USP9X (ubiquitin specific peptidase 9 X-linked) - Rat Genome Database

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Gene: USP9X (ubiquitin specific peptidase 9 X-linked) Chlorocebus sabaeus
Analyze
Symbol: USP9X (Ensembl: USP9Y)
Name: ubiquitin specific peptidase 9 X-linked (Ensembl:ubiquitin specific peptidase 9 Y-linked)
RGD ID: 18606540
Description: ENCODES a protein that exhibits co-SMAD binding (ortholog); cysteine-type endopeptidase activity (ortholog); deubiquitinase activity (ortholog); INVOLVED IN axon extension (ortholog); BMP signaling pathway (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); body dysmorphic disorder (ortholog); Developmental Disabilities (ortholog); FOUND IN apical part of cell (ortholog); centrosome (ortholog); cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: probable ubiquitin carboxyl-terminal hydrolase FAF-X
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,255,414 - 38,402,855 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblY489,840 - 626,098 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 EnsemblX38,256,008 - 38,403,323 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660763,448,010 - 3,595,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical part of cell  (ISO)
centrosome  (ISO)
cilium  (ISO)
cytoplasm  (ISO)
cytosol  (IEA,ISO)
growth cone  (ISO)
nucleus  (IEA)
postsynapse  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
USP9X
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X38,255,414 - 38,402,855 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblY489,840 - 626,098 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 EnsemblX38,256,008 - 38,403,323 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660763,448,010 - 3,595,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
USP9X
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X41,085,445 - 41,236,579 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX41,085,445 - 41,236,579 (+)EnsemblGRCh38hg38GRCh38
GRCh37X40,944,698 - 41,095,832 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X40,829,832 - 40,980,776 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX45,085,646 - 45,236,596 (+)NCBICelera
Cytogenetic MapXp11.4NCBI
HuRefX38,676,295 - 38,826,441 (+)NCBIHuRef
CHM1_1X40,977,600 - 41,128,503 (+)NCBICHM1_1
T2T-CHM13v2.0X40,487,470 - 40,638,605 (+)NCBIT2T-CHM13v2.0
Usp9x
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X12,937,221 - 13,039,567 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX12,937,737 - 13,039,567 (+)EnsemblGRCm39 Ensembl
GRCm38X13,070,982 - 13,173,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX13,071,498 - 13,173,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X12,648,624 - 12,750,454 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X12,228,496 - 12,328,745 (+)NCBIMGSCv36mm8
CeleraX10,768,972 - 10,871,748 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX7.95NCBI
Usp9x
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X12,261,633 - 12,399,780 (-)NCBIGRCr8
mRatBN7.2X9,588,825 - 9,726,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX9,588,825 - 9,696,711 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX9,772,936 - 9,880,483 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X13,270,083 - 13,377,627 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X9,539,867 - 9,647,608 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X10,510,033 - 10,660,555 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX10,510,033 - 10,630,297 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X11,308,415 - 11,458,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X21,606,330 - 21,718,042 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX10,119,391 - 10,226,802 (-)NCBICelera
Cytogenetic MapXq12NCBI
Usp9x
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555651,479,040 - 1,602,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555651,479,040 - 1,602,070 (-)NCBIChiLan1.0ChiLan1.0
USP9X
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X42,734,028 - 42,881,834 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X42,737,410 - 42,887,035 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X33,535,543 - 33,683,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X41,231,814 - 41,380,569 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX41,232,041 - 41,379,910 (+)Ensemblpanpan1.1panPan2
USP9X
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X35,522,873 - 35,676,086 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX22,845,661 - 23,024,786 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X35,571,563 - 35,712,343 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X35,624,905 - 35,803,984 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X35,597,545 - 35,776,521 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X35,640,469 - 35,819,595 (+)NCBIUU_Cfam_GSD_1.0
Usp9x
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X27,780,903 - 27,894,664 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365027,649,842 - 7,735,382 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365027,649,808 - 7,732,731 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP9X
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX36,760,865 - 36,885,250 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X36,736,049 - 36,888,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Usp9x
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476214,405,560 - 14,527,639 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476214,403,361 - 14,527,854 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 18 60
Low 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000012057   ⟹   ENSCSAP00000010107
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblX38,256,008 - 38,403,323 (+)Ensembl
RefSeq Acc Id: ENSCSAT00000016417   ⟹   ENSCSAP00000014331
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 EnsemblY489,840 - 626,098 (+)Ensembl
RefSeq Acc Id: XM_007991435   ⟹   XP_007989626
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X38,256,053 - 38,400,259 (+)NCBI
Vero_WHO_p1.0NW_0236660763,448,585 - 3,595,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991436   ⟹   XP_007989627
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X38,255,414 - 38,400,259 (+)NCBI
Vero_WHO_p1.0NW_0236660763,448,010 - 3,595,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991437   ⟹   XP_007989628
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X38,256,053 - 38,402,855 (+)NCBI
Vero_WHO_p1.0NW_0236660763,448,642 - 3,593,291 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991438   ⟹   XP_007989629
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X38,256,053 - 38,400,259 (+)NCBI
Vero_WHO_p1.0NW_0236660763,448,586 - 3,595,885 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007991439   ⟹   XP_007989630
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1X38,256,053 - 38,402,855 (+)NCBI
Vero_WHO_p1.0NW_0236660763,448,642 - 3,593,291 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_007989627   ⟸   XM_007991436
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989628   ⟸   XM_007991437
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007989630   ⟸   XM_007991439
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RNB8 (UniProtKB/TrEMBL),   A0A0D9S0E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007989626   ⟸   XM_007991435
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007989629   ⟸   XM_007991438
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S0E2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000010107   ⟸   ENSCSAT00000012057
RefSeq Acc Id: ENSCSAP00000014331   ⟸   ENSCSAT00000016417


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000013968 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCSAG00000018318 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000012057.1 UniProtKB/TrEMBL
  ENSCSAT00000016417.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  DUF3517 UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
NCBI Gene USP9X ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAF-X-RELATED UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAF-Y-RELATED UniProtKB/TrEMBL
Pfam DUF3517 UniProtKB/TrEMBL
  UCH UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A0D9RNB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0D9S0E2 ENTREZGENE, UniProtKB/TrEMBL