RBM12B (RNA binding motif protein 12B) - Rat Genome Database

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Gene: RBM12B (RNA binding motif protein 12B) Chlorocebus sabaeus
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Symbol: RBM12B
Name: RNA binding motif protein 12B
RGD ID: 18605527
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); ASSOCIATED WITH genetic disease (ortholog); myoepithelioma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 12B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1888,704,297 - 88,712,569 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl888,704,951 - 88,707,956 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603952,136,722 - 52,149,155 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBM12B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1888,704,297 - 88,712,569 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl888,704,951 - 88,707,956 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603952,136,722 - 52,149,155 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RBM12B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38893,728,155 - 93,741,009 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl893,728,155 - 93,741,017 (-)EnsemblGRCh38hg38GRCh38
GRCh37894,740,383 - 94,753,237 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36894,812,904 - 94,822,400 (-)NCBINCBI36Build 36hg18NCBI36
Celera890,929,789 - 90,939,285 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef889,951,263 - 89,960,755 (-)NCBIHuRef
CHM1_1894,784,018 - 94,793,512 (-)NCBICHM1_1
T2T-CHM13v2.0894,853,161 - 94,866,033 (-)NCBIT2T-CHM13v2.0
Rbm12b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39412,138,957 - 12,148,922 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl412,140,264 - 12,146,731 (+)EnsemblGRCm39 Ensembl
GRCm38412,138,957 - 12,148,922 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl412,140,264 - 12,146,731 (+)EnsemblGRCm38mm10GRCm38
MGSCv37412,067,264 - 12,073,892 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36412,067,464 - 12,073,878 (+)NCBIMGSCv36mm8
Celera328,599,613 - 28,600,101 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.58NCBI
Rbm12b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8530,394,756 - 30,507,428 (+)NCBIGRCr8
mRatBN7.2525,597,405 - 25,610,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl525,590,493 - 25,611,245 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0525,247,990 - 25,257,678 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl525,253,010 - 25,255,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0529,962,425 - 29,970,746 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4526,382,356 - 26,385,470 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1526,381,763 - 26,384,888 (+)NCBI
Celera524,920,046 - 24,928,196 (+)NCBICelera
Cytogenetic Map5q13NCBI
Rbm12b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,083,944 - 10,086,802 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541710,067,672 - 10,097,381 (-)NCBIChiLan1.0ChiLan1.0
RBM12B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27111,065,895 - 111,074,128 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1886,601,667 - 86,611,299 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0890,355,185 - 90,364,933 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1892,297,760 - 92,311,017 (-)NCBIpanpan1.1PanPan1.1panPan2
RBM12B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12938,631,313 - 38,641,998 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2938,634,742 - 38,637,723 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2938,792,185 - 38,804,225 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02938,834,294 - 38,846,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2938,839,007 - 38,841,988 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12938,848,170 - 38,860,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02938,842,743 - 38,854,785 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02939,284,239 - 39,296,282 (-)NCBIUU_Cfam_GSD_1.0
Rbm12b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,905,062 - 40,920,952 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365446,872,336 - 6,875,155 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365446,872,032 - 6,887,813 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM12B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl442,946,778 - 42,958,842 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1442,946,857 - 42,971,191 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2446,362,628 - 46,419,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rbm12b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,205,130 - 1,212,409 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624763726,665 - 1,219,697 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 25 12 58
Low 11 8 2
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000018649   ⟹   ENSCSAP00000018096
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl888,704,951 - 88,707,956 (-)Ensembl
RefSeq Acc Id: XM_008001085   ⟹   XP_007999276
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1888,704,319 - 88,712,569 (-)NCBI
Vero_WHO_p1.0NW_02366603952,136,731 - 52,149,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008001086   ⟹   XP_007999277
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1888,704,319 - 88,712,569 (-)NCBI
Vero_WHO_p1.0NW_02366603952,136,722 - 52,149,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008001087   ⟹   XP_007999278
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1888,704,297 - 88,712,569 (-)NCBI
Vero_WHO_p1.0NW_02366603952,136,731 - 52,149,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038000286   ⟹   XP_037856214
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603952,136,731 - 52,149,155 (+)NCBI
RefSeq Acc Id: XM_038000287   ⟹   XP_037856215
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603952,136,722 - 52,149,155 (+)NCBI
RefSeq Acc Id: XM_038000288   ⟹   XP_037856216
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603952,139,248 - 52,149,155 (+)NCBI
RefSeq Acc Id: XM_038000289   ⟹   XP_037856217
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603952,139,280 - 52,149,155 (+)NCBI
RefSeq Acc Id: XP_007999278   ⟸   XM_008001087
- UniProtKB: A0A0D9SB57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007999277   ⟸   XM_008001086
- UniProtKB: A0A0D9SB57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007999276   ⟸   XM_008001085
- UniProtKB: A0A0D9SB57 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000018096   ⟸   ENSCSAT00000018649
RefSeq Acc Id: XP_037856215   ⟸   XM_038000287
- UniProtKB: A0A0D9SB57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856214   ⟸   XM_038000286
- UniProtKB: A0A0D9SB57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856216   ⟸   XM_038000288
- UniProtKB: A0A0D9SB57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856217   ⟸   XM_038000289
- UniProtKB: A0A0D9SB57 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018559 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018649.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM12B_RRM2 UniProtKB/TrEMBL
  RBM12B_RRM3 UniProtKB/TrEMBL
  RRM4_RBM12B UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report csab:103237130 UniProtKB/TrEMBL
NCBI Gene RBM12B ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 12B UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A0D9SB57 ENTREZGENE, UniProtKB/TrEMBL