TARM1 (T cell-interacting, activating receptor on myeloid cells 1) - Rat Genome Database

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Gene: TARM1 (T cell-interacting, activating receptor on myeloid cells 1) Chlorocebus sabaeus
Analyze
Symbol: TARM1
Name: T cell-interacting, activating receptor on myeloid cells 1
RGD ID: 18603915
Description: ENCODES a protein that exhibits immunoglobulin receptor binding (ortholog); INVOLVED IN negative regulation of CD4-positive, alpha-beta T cell activation (ortholog); negative regulation of CD4-positive, alpha-beta T cell proliferation (ortholog); positive regulation of cytokine production involved in inflammatory response (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell-interacting, activating receptor on myeloid cells protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,749,522 - 46,755,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,749,580 - 46,754,799 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,835,838 - 26,840,960 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TARM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,749,522 - 46,755,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,749,580 - 46,754,799 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,835,838 - 26,840,960 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TARM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,069,895 - 54,081,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,069,895 - 54,081,365 (-)EnsemblGRCh38hg38GRCh38
GRCh371954,573,149 - 54,584,634 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,265,069 - 59,276,421 (-)NCBINCBI36Build 36hg18NCBI36
Celera1951,612,866 - 51,624,307 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,888,981 - 50,900,482 (-)NCBIHuRef
CHM1_11954,574,966 - 54,586,384 (-)NCBICHM1_1
T2T-CHM13v2.01957,148,389 - 57,159,893 (-)NCBIT2T-CHM13v2.0
Tarm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,535,015 - 3,551,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,535,016 - 3,551,140 (-)EnsemblGRCm39 Ensembl
GRCm3873,486,499 - 3,502,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,486,500 - 3,502,624 (-)EnsemblGRCm38mm10GRCm38
MGSCv3773,489,957 - 3,503,433 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera73,442,677 - 3,460,387 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.04NCBI
Tarm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,582,103 - 74,600,203 (+)NCBIGRCr8
mRatBN7.2165,666,742 - 65,682,402 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,671,902 - 65,679,626 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0164,241,742 - 64,256,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,241,865 - 64,254,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,233,198 - 63,248,022 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,979,894 - 63,992,593 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera163,390,776 - 63,405,679 (+)NCBICelera
Cytogenetic Map1q12NCBI
TARM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,074,577 - 60,087,223 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11961,996,362 - 62,009,012 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,002,643 - 51,014,597 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,846,601 - 59,857,087 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,846,601 - 59,857,087 (-)Ensemblpanpan1.1panPan2
LOC484314
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,182,052 - 103,187,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,243,657 - 103,249,266 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,831,921 - 103,837,531 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11103,464,747 - 103,470,357 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,226,403 - 103,232,012 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,945,330 - 103,950,941 (-)NCBIUU_Cfam_GSD_1.0
TARM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,038,524 - 56,049,764 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,038,524 - 56,051,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,165,322 - 53,171,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 19
Below cutoff 12 1 35

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007997973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCSAT00000016619   ⟹   ENSCSAP00000016121
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl646,749,580 - 46,754,799 (-)Ensembl
RefSeq Acc Id: XM_007997973   ⟹   XP_007996164
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1646,749,522 - 46,755,192 (-)NCBI
Vero_WHO_p1.0NW_02366607326,835,838 - 26,840,960 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007996164 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016121.1
Reference Protein Sequences
RefSeq Acc Id: XP_007996164   ⟸   XM_007997973
- UniProtKB: A0A0D9S5I2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000016121   ⟸   ENSCSAT00000016619


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001909 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016619.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
NCBI Gene TARM1 ENTREZGENE
PANTHER MHC CLASS I NK CELL RECEPTOR UniProtKB/TrEMBL
  T-CELL-INTERACTING, ACTIVATING RECEPTOR ON MYELOID CELLS PROTEIN 1 UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A0D9S5I2 ENTREZGENE, UniProtKB/TrEMBL