GPAM (glycerol-3-phosphate acyltransferase, mitochondrial) - Rat Genome Database

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Gene: GPAM (glycerol-3-phosphate acyltransferase, mitochondrial) Chlorocebus sabaeus
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Symbol: GPAM
Name: glycerol-3-phosphate acyltransferase, mitochondrial
RGD ID: 18601054
Description: ENCODES a protein that exhibits glycerol-3-phosphate O-acyltransferase activity (ortholog); INVOLVED IN activated T cell proliferation (ortholog); activation-induced cell death of T cells (ortholog); acyl-CoA metabolic process (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Experimental Liver Cirrhosis (ortholog); Hypertriglyceridemia (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrial outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glycerol-3-phosphate acyltransferase 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,049,954 - 105,083,750 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,049,711 - 105,113,374 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,253,108 - 66,316,689 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
GPAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19105,049,954 - 105,083,750 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl9105,049,711 - 105,113,374 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604866,253,108 - 66,316,689 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
GPAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810112,149,865 - 112,227,677 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10112,149,865 - 112,215,377 (-)EnsemblGRCh38hg38GRCh38
GRCh3710113,909,623 - 113,943,523 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610113,899,612 - 113,933,508 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410113,899,611 - 113,933,508NCBI
Celera10107,637,183 - 107,671,081 (-)NCBICelera
Cytogenetic Map10q25.2NCBI
HuRef10107,537,900 - 107,571,823 (-)NCBIHuRef
CHM1_110114,191,437 - 114,225,332 (-)NCBICHM1_1
T2T-CHM13v2.010113,040,886 - 113,118,691 (-)NCBIT2T-CHM13v2.0
Gpam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391955,056,067 - 55,115,666 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1955,055,700 - 55,115,670 (-)EnsemblGRCm39 Ensembl
GRCm381955,067,635 - 55,127,319 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1955,067,268 - 55,127,238 (-)EnsemblGRCm38mm10GRCm38
MGSCv371955,144,224 - 55,173,937 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361955,122,984 - 55,152,703 (-)NCBIMGSCv36mm8
Celera1957,260,690 - 57,290,402 (-)NCBICelera
Cytogenetic Map19D2NCBI
cM Map1950.81NCBI
Gpam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81264,111,599 - 264,176,112 (-)NCBIGRCr8
mRatBN7.21254,106,323 - 254,170,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1254,106,331 - 254,142,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1262,315,818 - 262,376,481 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01269,021,904 - 269,082,569 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01261,664,129 - 261,730,618 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01275,843,823 - 275,906,880 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1275,846,819 - 275,906,686 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01283,246,186 - 283,309,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41261,370,264 - 261,431,434 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11261,581,308 - 261,642,479 (-)NCBI
Celera1249,818,009 - 249,877,839 (-)NCBICelera
Cytogenetic Map1q55NCBI
Gpam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543117,291,270 - 17,363,714 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543117,291,890 - 17,363,611 (-)NCBIChiLan1.0ChiLan1.0
GPAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28124,031,551 - 124,065,468 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110124,036,887 - 124,070,804 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010108,747,370 - 108,781,270 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110112,186,744 - 112,246,549 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10112,186,744 - 112,246,549 (-)Ensemblpanpan1.1panPan2
GPAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12823,261,673 - 23,323,985 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2823,258,428 - 23,298,017 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2823,413,452 - 23,450,047 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02823,793,834 - 23,830,470 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2823,793,834 - 23,830,650 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12823,351,250 - 23,387,551 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02823,362,221 - 23,398,810 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02823,557,678 - 23,594,318 (-)NCBIUU_Cfam_GSD_1.0
Gpam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721322,737,594 - 22,806,520 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364862,754,751 - 2,823,665 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364862,754,753 - 2,823,600 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14122,538,491 - 122,579,436 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114122,538,600 - 122,582,390 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214133,473,315 - 133,545,241 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Gpam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473734,198,518 - 34,265,192 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473734,198,773 - 34,268,815 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GPAM
738 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000003180   ⟹   ENSCSAP00000001468
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl9105,049,711 - 105,113,374 (-)Ensembl
RefSeq Acc Id: XM_007964096   ⟹   XP_007962287
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.19105,049,954 - 105,083,750 (-)NCBI
Vero_WHO_p1.0NW_02366604866,253,108 - 66,286,936 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038009561   ⟹   XP_037865489
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604866,253,108 - 66,286,952 (-)NCBI
RefSeq Acc Id: XM_038009562   ⟹   XP_037865490
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604866,253,108 - 66,316,689 (-)NCBI
RefSeq Acc Id: XM_038009563   ⟹   XP_037865491
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604866,253,108 - 66,286,877 (-)NCBI
RefSeq Acc Id: XM_038009564   ⟹   XP_037865492
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604866,253,108 - 66,286,761 (-)NCBI
RefSeq Acc Id: XP_007962287   ⟸   XM_007964096
- UniProtKB: A0A0D9QYM9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000001468   ⟸   ENSCSAT00000003180
RefSeq Acc Id: XP_037865490   ⟸   XM_038009562
- UniProtKB: A0A0D9QYM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865489   ⟸   XM_038009561
- UniProtKB: A0A0D9QYM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865491   ⟸   XM_038009563
- UniProtKB: A0A0D9QYM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037865492   ⟸   XM_038009564
- UniProtKB: A0A0D9QYM9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005144 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003180.1 UniProtKB/TrEMBL
InterPro GPAT/DHAPAT UniProtKB/TrEMBL
  GPAT/DHAPAT_LPLAT UniProtKB/TrEMBL
  GPAT_C UniProtKB/TrEMBL
  GPAT_PlsB UniProtKB/TrEMBL
  Plipid/glycerol_acylTrfase UniProtKB/TrEMBL
KEGG Report csab:103216523 UniProtKB/TrEMBL
NCBI Gene GPAM ENTREZGENE
PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR12563 UniProtKB/TrEMBL
Pfam Acyltransferase UniProtKB/TrEMBL
  GPAT_C UniProtKB/TrEMBL
PIRSF GPAT UniProtKB/TrEMBL
  GPAT_DHAPAT UniProtKB/TrEMBL
SMART PlsC UniProtKB/TrEMBL
Superfamily-SCOP Glycerol-3-phosphate (1)-acyltransferase UniProtKB/TrEMBL
UniProt A0A0D9QYM9 ENTREZGENE, UniProtKB/TrEMBL