MYO3A (myosin IIIA) - Rat Genome Database

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Gene: MYO3A (myosin IIIA) Chlorocebus sabaeus
Analyze
Symbol: MYO3A
Name: myosin IIIA
RGD ID: 18600607
Description: ENCODES a protein that exhibits actin filament binding (ortholog); ADP binding (ortholog); calmodulin binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); cochlea morphogenesis (ortholog); inner ear development (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Autosomal Dominant Nonsyndromic Deafness 90 (ortholog); autosomal recessive nonsyndromic deafness 30 (ortholog); Bilateral Hearing Loss (ortholog); FOUND IN cytoplasm (ortholog); filamentous actin (ortholog); filopodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myosin-IIIa
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1925,635,918 - 25,902,552 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605131,626,230 - 31,887,932 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
MYO3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1925,635,918 - 25,902,552 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605131,626,230 - 31,887,932 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
MYO3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381025,934,229 - 26,212,532 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1025,934,229 - 26,212,532 (+)EnsemblGRCh38hg38GRCh38
GRCh371026,223,158 - 26,501,461 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361026,263,008 - 26,541,471 (+)NCBINCBI36Build 36hg18NCBI36
Build 341026,263,201 - 26,541,461NCBI
Celera1025,934,775 - 26,213,211 (+)NCBICelera
Cytogenetic Map10p12.1NCBI
HuRef1025,882,877 - 26,160,876 (+)NCBIHuRef
CHM1_11026,223,961 - 26,502,366 (+)NCBICHM1_1
T2T-CHM13v2.01025,959,075 - 26,237,044 (+)NCBIT2T-CHM13v2.0
Myo3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39222,232,360 - 22,508,693 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl222,232,314 - 22,508,264 (+)EnsemblGRCm39 Ensembl
GRCm38222,227,503 - 22,618,252 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl222,227,503 - 22,618,252 (+)EnsemblGRCm38mm10GRCm38
MGSCv37222,397,933 - 22,473,772 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37222,149,130 - 22,345,058 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36222,145,268 - 22,326,670 (+)NCBIMGSCv36mm8
Celera222,084,521 - 22,348,339 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map215.15NCBI
Myo3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81789,451,567 - 89,667,654 (+)NCBIGRCr8
mRatBN7.21784,543,465 - 84,759,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1784,543,552 - 84,759,042 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01788,952,635 - 89,167,538 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1788,963,981 - 89,167,018 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01790,644,728 - 90,848,287 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41795,974,131 - 96,255,016 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1784,131,602 - 84,345,464 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
Myo3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554293,172,996 - 3,358,688 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554293,172,457 - 3,358,688 (-)NCBIChiLan1.0ChiLan1.0
MYO3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2838,626,432 - 38,911,867 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11038,631,757 - 38,917,192 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01026,104,588 - 26,389,942 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11026,469,742 - 26,754,989 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1026,469,742 - 26,754,989 (+)Ensemblpanpan1.1panPan2
MYO3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.127,455,125 - 7,695,483 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl27,455,625 - 7,696,043 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha26,179,179 - 6,283,009 (-)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha26,315,895 - 6,383,364 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.025,651,655 - 5,891,742 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl25,652,155 - 5,892,411 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.125,021,608 - 5,261,003 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.025,101,017 - 5,341,262 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.025,266,724 - 5,512,877 (-)NCBIUU_Cfam_GSD_1.0
Myo3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934425,343,749 - 25,558,593 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364841,509,235 - 1,723,554 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364841,509,248 - 1,723,717 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYO3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11049,392,119 - 49,623,575 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21054,693,394 - 54,927,747 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Myo3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247962,774,153 - 2,983,853 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008002560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008002575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_037983400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005235175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008002560   ⟹   XP_008000751
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1925,635,918 - 25,902,552 (+)NCBI
Vero_WHO_p1.0NW_02366605131,626,251 - 31,887,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002561   ⟹   XP_008000752
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1925,636,173 - 25,902,101 (+)NCBI
Vero_WHO_p1.0NW_02366605131,626,230 - 31,887,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002566   ⟹   XP_008000757
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1925,636,173 - 25,902,552 (+)NCBI
Vero_WHO_p1.0NW_02366605131,626,251 - 31,887,932 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008002567   ⟹   XP_008000758
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1925,636,173 - 25,902,101 (+)NCBI
Vero_WHO_p1.0NW_02366605131,626,251 - 31,887,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037983400   ⟹   XP_037839328
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605131,631,951 - 31,887,931 (+)NCBI
RefSeq Acc Id: XR_005235175
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605131,626,251 - 31,887,931 (+)NCBI
RefSeq Acc Id: XP_008000751   ⟸   XM_008002560
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008000757   ⟸   XM_008002566
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008000758   ⟸   XM_008002567
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008000752   ⟸   XM_008002561
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037839328   ⟸   XM_037983400
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene MYO3A ENTREZGENE