CREBRF (CREB3 regulatory factor) - Rat Genome Database

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Gene: CREBRF (CREB3 regulatory factor) Chlorocebus sabaeus
Analyze
Symbol: CREBRF
Name: CREB3 regulatory factor
RGD ID: 18598012
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN maternal behavior (ortholog); negative regulation of endoplasmic reticulum unfolded protein response (ortholog); negative regulation of glucocorticoid mediated signaling pathway (ortholog); ASSOCIATED WITH atrial heart septal defect 7 (ortholog); Atrial Septal Defect with Atrioventricular Conduction Defects (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,219,847 - 75,302,641 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,219,873 - 75,297,114 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,307,959 - 3,391,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CREBRF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,219,847 - 75,302,641 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,219,873 - 75,297,114 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660343,307,959 - 3,391,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CREBRF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,056,352 - 173,139,284 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,056,352 - 173,139,284 (+)EnsemblGRCh38hg38GRCh38
GRCh375172,483,355 - 172,566,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,415,976 - 172,496,576 (+)NCBINCBI36Build 36hg18NCBI36
Celera5168,516,821 - 168,599,691 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5167,577,727 - 167,660,756 (+)NCBIHuRef
CHM1_15171,916,093 - 171,998,823 (+)NCBICHM1_1
T2T-CHM13v2.05173,596,456 - 173,679,391 (+)NCBIT2T-CHM13v2.0
Crebrf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,918,716 - 26,995,611 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,934,624 - 26,995,609 (+)EnsemblGRCm39 Ensembl
GRCm381726,715,594 - 26,776,637 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,715,650 - 26,776,635 (+)EnsemblGRCm38mm10GRCm38
MGSCv371726,852,595 - 26,913,573 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361726,443,240 - 26,500,610 (+)NCBIMGSCv36mm8
Celera1727,252,264 - 27,313,223 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.5NCBI
Crebrf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,903,607 - 16,967,450 (-)NCBIGRCr8
mRatBN7.21016,399,170 - 16,479,650 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,404,596 - 16,461,999 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1021,154,570 - 21,211,940 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,643,143 - 20,700,513 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,132,647 - 16,190,144 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,693,846 - 16,753,162 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,694,792 - 16,752,205 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01016,582,414 - 16,661,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41016,665,420 - 16,723,929 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11016,668,717 - 16,724,978 (-)NCBI
Celera1016,064,097 - 16,120,536 (-)NCBICelera
Cytogenetic Map10q12NCBI
Crebrf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,719,187 - 25,774,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540825,718,523 - 25,769,551 (+)NCBIChiLan1.0ChiLan1.0
CREBRF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,194,964 - 168,275,816 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,334,506 - 166,415,358 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,409,668 - 168,492,678 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,318,644 - 175,401,330 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,318,674 - 175,403,334 (+)Ensemblpanpan1.1panPan2
CREBRF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,308,429 - 39,366,031 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,313,512 - 39,365,953 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha439,253,882 - 39,311,481 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0439,679,380 - 39,737,014 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,682,441 - 39,736,999 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,496,142 - 39,553,778 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,685,871 - 39,743,521 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,194,925 - 40,252,631 (-)NCBIUU_Cfam_GSD_1.0
Crebrf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,738,135 - 93,775,972 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,449,601 - 2,498,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366092,460,379 - 2,498,614 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CREBRF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1651,150,560 - 51,226,212 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11651,146,015 - 51,210,806 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,459,289 - 55,523,885 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Crebrf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473316,952,319 - 17,017,396 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000007630   ⟹   ENSCSAP00000005805
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2375,219,873 - 75,297,114 (+)Ensembl
RefSeq Acc Id: XM_008015311   ⟹   XP_008013502
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12375,219,847 - 75,302,641 (+)NCBI
Vero_WHO_p1.0NW_0236660343,307,959 - 3,391,570 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008015312   ⟹   XP_008013503
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12375,219,847 - 75,302,641 (+)NCBI
Vero_WHO_p1.0NW_0236660343,307,959 - 3,391,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008015313   ⟹   XP_008013504
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12375,219,847 - 75,302,641 (+)NCBI
Vero_WHO_p1.0NW_0236660343,307,959 - 3,391,584 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038010374   ⟹   XP_037866302
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660343,307,959 - 3,358,337 (-)NCBI
Protein Sequences
Protein RefSeqs XP_008013502 (Get FASTA)   NCBI Sequence Viewer  
  XP_008013503 (Get FASTA)   NCBI Sequence Viewer  
  XP_008013504 (Get FASTA)   NCBI Sequence Viewer  
  XP_037866302 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000005805
  ENSCSAP00000005805.1
RefSeq Acc Id: XP_008013502   ⟸   XM_008015311
- Peptide Label: isoform X2
RefSeq Acc Id: XP_008013503   ⟸   XM_008015312
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RB16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008013504   ⟸   XM_008015313
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000005805   ⟸   ENSCSAT00000007630
RefSeq Acc Id: XP_037866302   ⟸   XM_038010374
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000009545 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000007630.1 UniProtKB/TrEMBL
InterPro bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  CREBRF UniProtKB/TrEMBL
NCBI Gene CREBRF ENTREZGENE
PANTHER CREB3 REGULATORY FACTOR UniProtKB/TrEMBL
  PTHR21552 UniProtKB/TrEMBL
PROSITE BZIP_BASIC UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt A0A0D9RB16 ENTREZGENE, UniProtKB/TrEMBL