SNAPC2 (small nuclear RNA activating complex polypeptide 2)

Gene: SNAPC2 (small nuclear RNA activating complex polypeptide 2) Chlorocebus sabaeus

Analyze

Symbol:

SNAPC2

Name:

small nuclear RNA activating complex polypeptide 2

RGD ID:

18594081

Description:

ENCODES a protein that exhibits RNA polymerase II general transcription initiation factor activity (inferred); INVOLVED IN snRNA transcription (inferred); transcription by RNA polymerase II (inferred); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH familial hemophagocytic lymphohistiocytosis 5 (ortholog); genetic disease (ortholog); mucolipidosis type IV (ortholog); FOUND IN cytosol (inferred); nuclear body (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

snRNA-activating protein complex subunit 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	7,371,623 - 7,374,617 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	7,370,959 - 7,376,998 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	439,688 - 442,719 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial hemophagocytic lymphohistiocytosis 5 (ISO)

genetic disease (ISO)

mucolipidosis type IV (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

snRNA transcription (IEA)

transcription by RNA polymerase II (IEA)

Cellular Component

cytosol (IEA)

nuclear body (IEA)

nucleoplasm (IEA)

Molecular Function

RNA polymerase II general transcription initiation factor activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase III transcription pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

SNAPC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	7,371,623 - 7,374,617 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	7,370,959 - 7,376,998 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	439,688 - 442,719 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SNAPC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	7,920,338 - 7,923,250 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	7,920,338 - 7,923,250 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	7,985,223 - 7,988,135 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	7,891,229 - 7,894,134 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	7,891,228 - 7,894,134	NCBI
Celera	19	7,856,396 - 7,859,338 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	7,655,493 - 7,658,435 (+)	NCBI		HuRef
CHM1_1	19	7,984,663 - 7,987,605 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	7,921,293 - 7,924,205 (+)	NCBI		T2T-CHM13v2.0

Snapc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	4,303,102 - 4,306,220 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	4,303,080 - 4,306,220 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	4,253,102 - 4,256,220 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	4,253,080 - 4,256,220 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	4,253,102 - 4,256,220 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	4,253,102 - 4,256,220 (+)	NCBI		MGSCv36	mm8
Celera	8	4,453,691 - 4,456,809 (+)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	1.99	NCBI

Snapc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	7,403,650 - 7,406,840 (+)	NCBI		GRCr8
mRatBN7.2	12	2,605,794 - 2,608,997 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	2,605,810 - 2,608,999 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	3,253,889 - 3,257,071 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	3,877,480 - 3,880,662 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	2,640,493 - 2,643,675 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	2,537,291 - 2,540,774 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	2,537,275 - 2,540,668 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	4,690,238 - 4,693,261 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	1,534,904 - 1,538,056 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	1,534,905 - 1,538,056 (-)	NCBI
Celera	12	4,421,340 - 4,424,527 (+)	NCBI		Celera
Cytogenetic Map	12	p12	NCBI

Snapc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955563	1,343,085 - 1,347,496 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955563	1,345,100 - 1,347,593 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNAPC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	12,603,182 - 12,606,032 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	11,720,379 - 11,723,230 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	7,221,613 - 7,224,501 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	8,073,530 - 8,077,142 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	8,074,290 - 8,076,662 (+)	Ensembl	panpan1.1		panPan2

SNAPC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	52,608,384 - 52,611,252 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	52,608,447 - 52,611,221 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	52,410,972 - 52,413,740 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	53,136,645 - 53,139,526 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	53,136,686 - 53,142,982 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	52,339,912 - 52,342,829 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	52,784,519 - 52,787,288 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	53,016,006 - 53,018,827 (+)	NCBI		UU_Cfam_GSD_1.0

Snapc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	212,935,786 - 212,938,482 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	4,896,329 - 4,901,417 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	4,896,248 - 4,898,996 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNAPC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	71,291,257 - 71,294,006 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	71,291,256 - 71,294,508 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	71,691,644 - 71,694,334 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Snapc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	883,194 - 885,408 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	882,370 - 885,866 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	17		40
Low	19	18	20
Below cutoff		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007995105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007995106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000006218 ⟹ ENSCSAP00000004426

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	6	7,370,959 - 7,376,998 (+)	Ensembl

RefSeq Acc Id:

XM_007995105 ⟹ XP_007993296

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	7,371,623 - 7,374,617 (+)	NCBI
Vero_WHO_p1.0	NW_023666081	439,688 - 442,719 (-)	NCBI

Sequence:

show sequence

ACCCCCACGTGCGTCCGCCTCCGCGTGGTGCTTTCTGGCCTCGGCGGCCCCCGTAGCTCCGCCC
GCCGGAGACCTGCCTTACAGCGCCTGCGTCTTTCTGACCGGCATGAAGCCACCTCCCAGGCGGC
GAGCGGCCCCGGCGCGCTATCTGGGCGAGGTGACCGGTCCCGCGACCTGGAGCGCTCGCGAGAA
GCGGCAGCTAGTGAGACTCCTGCAGGCGCGACAGGGCCAGCCGGAGCCGGACGCCGCCGAGCTG
GCCCGGGAGCTGCAAGGCCGGAGCGAGGCTGAGATCCGGGTCTTCCTCCAGCAGCTCAAGGGCC
GCGTAGCCCGGGAGGCCATTCAAAAGGTGCATCCGGGTGGCCTTCAGGGACCAAGGCGCCGGGA
GGCACAGCCCCCAGCCCCCATAGAGGTCTGGACGGATCTGGCTGAGAAGATAACAGGGCCACTG
GAGGAAGCCCTGGCAGTGGCTTTCTCGCAGGTGCTCACCATCGCGGCCACGGAACCGGTCACCC
TCCTGCACTCCAAGCCCCCCAAGCCCACGCAGGCCCGTGGAAAGCCGCTGCTCCTGAGCGCCCC
TGCAGGGCAGGAAGACTCTGCCCCTGAGATACCTAGCTCCGCCCCCAAGGCACCTAGCTCCACC
CCCGAGACTTCTGCCCCTGCCCCTGAGAAACCTGCGTCCTCCGCTGGTCCCTCCACTGAACAAG
ACTTCGCTGTGGACTTTGAGAAGATCTACAAATACTTGTCCTCTCTCTCCCGAAGTGGCCGCAG
CCCTGAGCTCTCAGCAGCTGAGTCGGCTGTGGTCCTCGACCTGCTCATGTCACTTCCAGAGGAG
CTGCCCCTCCTGCCCTGCACAGCCTTGGTTGAGCATATGACGGAGACATACTTACGTCTGACAG
CCCCCCAGCCCAGCCCCGCTGGAGGGAGCCTGGGGCCTGCTGCTGAGGGGGAAGGGGCTGGCTC
CAAGGCACCAGAGGAGACCCCCCCAGCCACCAAGAAGGCCGAGCCCAGCGAATTGAAATCGTCC
TGGCAAGCAGCTGGGATCTGTCCCCTGAACCCGTTCCTGGTGCCCCTGGAGCTTCTGGGTCGGG
CAGCCACCCCTGCCAGGTGAGGGGCATGGCGGGCAGGAGGCACACCAGGCCCCCTGCCCTGGCC
CTCGGTTCTGCTCGGCTGGCACTGGCTCTTTCTGAGGATCCCGTCGTGTGGGAATGTCCCTGAG
ATGACGCTCAGCTGTGGGGCCTCTGAGACGCCCCACACTTTGGGGGTTTCAGAAATGGAACCCC
CGTTGTACAGGGGTTCGGTGGGGGTTACGGGACTCCACTCACAAGCCTCCCGACCTCCGGGACA
GGCGGACAGGGCTGGCCTCCCCCAGTCCCCAAGCCCCACTGCGCCTTGTTGTCTCCTGGGGGCC
ACAGCTGGCACTGCACACCGGAAACGCTCTCACACGTTTCCCCTTCCTGTACCTCGGGACCAGC
ATCTTCACTTTCTTCAACTGACCAGTCGTGGATACTACTACCTGCTGCCAGCTCCTTCCCCTTC
CCGAGGGTATTCTGTGACCATGAATAAAGTCCTCATTATTCTCTTTC

hide sequence

RefSeq Acc Id:

XM_007995106 ⟹ XP_007993297

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	6	7,372,390 - 7,374,617 (+)	NCBI
Vero_WHO_p1.0	NW_023666081	439,688 - 442,002 (-)	NCBI

Sequence:

show sequence

GGTGGGGCGAGGGCGAAAGGGGCGGAATGAACTGGGAGTAAGATGCAGCCGAGGCCAGTCTTGA
AAAGCAACGCATGCTGTTGGACAGGATACGAGCTTGAAATCCGGGTCTTCCTCCAGCAGCTCAA
GGGCCGCGTAGCCCGGGAGGCCATTCAAAAGGTGCATCCGGGTGGCCTTCAGGGACCAAGGCGC
CGGGAGGCACAGCCCCCAGCCCCCATAGAGGTCTGGACGGATCTGGCTGAGAAGATAACAGGGC
CACTGGAGGAAGCCCTGGCAGTGGCTTTCTCGCAGGTGCTCACCATCGCGGCCACGGAACCGGT
CACCCTCCTGCACTCCAAGCCCCCCAAGCCCACGCAGGCCCGTGGAAAGCCGCTGCTCCTGAGC
GCCCCTGCAGGGCAGGAAGACTCTGCCCCTGAGATACCTAGCTCCGCCCCCAAGGCACCTAGCT
CCACCCCCGAGACTTCTGCCCCTGCCCCTGAGAAACCTGCGTCCTCCGCTGGTCCCTCCACTGA
ACAAGACTTCGCTGTGGACTTTGAGAAGATCTACAAATACTTGTCCTCTCTCTCCCGAAGTGGC
CGCAGCCCTGAGCTCTCAGCAGCTGAGTCGGCTGTGGTCCTCGACCTGCTCATGTCACTTCCAG
AGGAGCTGCCCCTCCTGCCCTGCACAGCCTTGGTTGAGCATATGACGGAGACATACTTACGTCT
GACAGCCCCCCAGCCCAGCCCCGCTGGAGGGAGCCTGGGGCCTGCTGCTGAGGGGGAAGGGGCT
GGCTCCAAGGCACCAGAGGAGACCCCCCCAGCCACCAAGAAGGCCGAGCCCAGCGAATTGAAAT
CGTCCTGGCAAGCAGCTGGGATCTGTCCCCTGAACCCGTTCCTGGTGCCCCTGGAGCTTCTGGG
TCGGGCAGCCACCCCTGCCAGGTGAGGGGCATGGCGGGCAGGAGGCACACCAGGCCCCCTGCCC
TGGCCCTCGGTTCTGCTCGGCTGGCACTGGCTCTTTCTGAGGATCCCGTCGTGTGGGAATGTCC
CTGAGATGACGCTCAGCTGTGGGGCCTCTGAGACGCCCCACACTTTGGGGGTTTCAGAAATGGA
ACCCCCGTTGTACAGGGGTTCGGTGGGGGTTACGGGACTCCACTCACAAGCCTCCCGACCTCCG
GGACAGGCGGACAGGGCTGGCCTCCCCCAGTCCCCAAGCCCCACTGCGCCTTGTTGTCTCCTGG
GGGCCACAGCTGGCACTGCACACCGGAAACGCTCTCACACGTTTCCCCTTCCTGTACCTCGGGA
CCAGCATCTTCACTTTCTTCAACTGACCAGTCGTGGATACTACTACCTGCTGCCAGCTCCTTCC
CCTTCCCGAGGGTATTCTGTGACCATGAATAAAGTCCTCATTATTCTCTTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_007993296	(Get FASTA)	NCBI Sequence Viewer
	XP_007993297	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000004426
	ENSCSAP00000004426.1

RefSeq Acc Id:	XP_007993296 ⟸ XM_007995105
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9R737 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007993297 ⟸ XM_007995106
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSCSAP00000004426 ⟸ ENSCSAT00000006218

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000008167	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000006218.1	UniProtKB/TrEMBL
InterPro	SnAPC_su2-like	UniProtKB/TrEMBL
KEGG Report	csab:103233825	UniProtKB/TrEMBL
NCBI Gene	SNAPC2	ENTREZGENE
PANTHER	PTHR15132	UniProtKB/TrEMBL
	SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 2	UniProtKB/TrEMBL
Pfam	SnAPC_2_like	UniProtKB/TrEMBL
UniProt	A0A0D9R737	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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