PKNOX2 (PBX/knotted 1 homeobox 2)

Gene: PKNOX2 (PBX/knotted 1 homeobox 2) Chlorocebus sabaeus

Analyze

Symbol:

PKNOX2

Name:

PBX/knotted 1 homeobox 2

RGD ID:

18593319

Description:

ENCODES a protein that exhibits actin filament binding (inferred); actin monomer binding (inferred); DNA binding (inferred); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); Familial Prostate Cancer (ortholog); FOUND IN actin cytoskeleton (inferred); cytoplasm (inferred); intercellular bridge (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

homeobox protein PKNOX2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	116,332,851 - 116,604,758 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	116,523,593 - 116,605,161 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	9,519,677 - 9,788,985 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 11, Partial Trisomy 11q (ISO)

Dwarfism (ISO)

Familial Prostate Cancer (ISO)

genetic disease (ISO)

holoprosencephaly 11 (ISO)

Jacobsen Syndrome (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA,ISO)

Cellular Component

actin cytoskeleton (IEA)

cytoplasm (IEA)

intercellular bridge (IEA)

microtubule cytoskeleton (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

actin filament binding (IEA)

actin monomer binding (IEA)

DNA binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

PKNOX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	116,332,851 - 116,604,758 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	116,523,593 - 116,605,161 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	9,519,677 - 9,788,985 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

PKNOX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	125,164,751 - 125,433,389 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	125,164,687 - 125,433,389 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	125,034,647 - 125,303,285 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	124,539,769 - 124,808,495 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	124,726,419 - 124,808,264	NCBI
Celera	11	122,194,601 - 122,463,611 (+)	NCBI		Celera
Cytogenetic Map	11	q24.2	NCBI
HuRef	11	120,976,463 - 121,244,840 (+)	NCBI		HuRef
CHM1_1	11	124,920,619 - 125,189,521 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	125,193,419 - 125,462,086 (+)	NCBI		T2T-CHM13v2.0

Pknox2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	36,802,278 - 37,058,637 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	36,802,278 - 37,058,703 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	36,890,979 - 37,147,342 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	36,890,982 - 37,147,407 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	36,698,567 - 36,954,899 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	36,640,653 - 36,896,985 (-)	NCBI		MGSCv36	mm8
Celera	9	34,095,372 - 34,359,379 (-)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	20.7	NCBI

Pknox2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	44,789,464 - 45,051,933 (-)	NCBI		GRCr8
mRatBN7.2	8	36,600,633 - 36,863,131 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	36,600,636 - 36,790,940 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	40,610,916 - 40,800,359 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	38,893,988 - 39,083,446 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	36,756,879 - 36,946,335 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	39,361,698 - 39,551,700 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	39,361,218 - 39,551,700 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	39,364,740 - 39,554,742 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	38,136,835 - 38,325,406 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	37,651,569 - 37,840,535 (+)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

Pknox2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	26,372,846 - 26,468,926 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	26,214,671 - 26,468,737 (+)	NCBI	ChiLan1.0	ChiLan1.0

PKNOX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	125,807,624 - 126,128,241 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	126,912,553 - 127,240,365 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	119,991,916 - 120,259,800 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	123,906,012 - 124,173,865 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	124,072,715 - 124,173,865 (+)	Ensembl	panpan1.1		panPan2

PKNOX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	9,054,138 - 9,363,750 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	9,056,134 - 9,178,159 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	9,098,622 - 9,408,616 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	8,994,772 - 9,302,925 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	8,994,772 - 9,251,650 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	9,065,978 - 9,375,742 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	9,036,663 - 9,346,271 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	9,072,792 - 9,382,834 (-)	NCBI		UU_Cfam_GSD_1.0

Pknox2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	107,342,759 - 107,612,737 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936743	1,661,791 - 1,858,278 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936743	1,661,783 - 1,860,299 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PKNOX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	52,349,714 - 52,610,680 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	52,303,022 - 52,608,505 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	58,127,081 - 58,195,478 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Pknox2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624927	1,275,956 - 1,460,170 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624927	1,197,610 - 1,459,777 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	15		15
Low	21	11	45
Below cutoff		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008021384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008021385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008021386	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038005017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000000327 ⟹ ENSCSAP00000015727

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	116,523,593 - 116,605,161 (+)	Ensembl

RefSeq Acc Id:

XM_008021384 ⟹ XP_008019575

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	116,332,851 - 116,604,758 (+)	NCBI
Vero_WHO_p1.0	NW_023666043	9,519,677 - 9,788,985 (-)	NCBI

Sequence:

show sequence

AAGGGGGGGTTCGGGGGGCGGGTCCCTGTGCCGCTGACGTCCCGAGCAGTGCTGGGAAGTATAG
GCTGTGTTGTCACGCCGGTGTCAGTCTGATGAAGATTGGCATCAGGTGAAGTCTGGAGCAGGAC
TTCTGAGGCTTTCTATCCTCCATGCCGCTCACTAGAAAAGGGGCTGTGAACTGTGCTTTGGCTC
TAGCAGAGAGGGAGAAATTCTGGCCCAGCTGGAAGTAGAAAGAGGGGAGTGACTCTCCTGAGGA
CCATCTCAGAGACCCCTGGGATCACCTGAACAGTCCTCCATGTGAATCAATCCCATGATGCAAC
ATGCCTCCCCAGCCCCCGCTCTGACGATGATGGCCACGCAGAATGTCCCGCCCCCACCCTACCA
GGACAGCCCACAGATGACGGCAACCGCCCAGCCACCCTCCAAGGCCCAGGCTGTCCACATCTCT
GCCCCCTCAGCTGCTGCCAGCACACCTGTACCCAGTGCCCCCATCGACCCCCAGGCCCAGCTGG
AGGCTGACAAGCGAGCTGTGTACAGGCACCCTCTTTTCCCGCTCCTGACGCTGCTGTTTGAGAA
ATGTGAACAGGCCACCCAGGGCTCTGAGTGCATCACCTCCGCCAGCTTTGATGTGGACATCGAG
AACTTTGTCCACCAGCAGGAGCAGGAGCACAAACCCTTCTTCAGCGATGACCCAGAACTGGACA
ATCTGATGGTGAAGGCAATCCAGGTCCTGAGAATCCACCTGCTGGAGCTGGAAAAAGTCAATGA
ACTCTGCAAGGACTTTTGTAACCGTTACATCACCTGCCTCAAAACCAAGATGCACAGTGATAAC
CTGCTCAGGAATGACCTAGGGGGGCCCTACTCCCCCAACCAGCCCTCCATCAACCTTCACTCAC
AGGACCTCCTGCAGAATTCCCCCAATTCCATGTCTGGAGTCTCCAATAACCCCCAGGGAATTGT
GGTCCCAGCCTCAGCGCTCCAGCAGGGCAACATCGCCATGACAACCGTCAACTCACAAGTCGTG
TCAGGTGGAGCCTTATACCAACCGGTTACCATGGTAACCTCCCAGGGTCAGGTGGTCACCCAAG
CAATCCCCCAGGGAGCCATCCAGATCCAGAACACACAGGTTAACCTTGACCTCACCTCCCTCCT
GGACAATGAGGATAAGAAGTCCAAGAACAAACGAGGAGTCTTGCCCAAGCATGCCACCAATATA
ATGCGTTCTTGGCTCTTCCAGCATCTCATGCACCCCTACCCCACGGAGGACGAGAAGAGGCAGA
TCGCAGCCCAGACCAACCTCACCCTCCTGCAAGTAAATAACTGGTTCATCAATGCCCGGAGGCG
CATCCTGCAGCCCATGCTTGATGCCAGCAACCCAGACCCTGCTCCCAAAGCCAAGAAGATCAAG
TCTCAGCACCGGCCCACCCAAAGATTCTGGCCCAACTCCATCGCTGCAGGGGTGCTGCAGCAGC
AGAGCGGTGCCCCAGGGACAAACCCCGATGGTTCCATCAACTTGGACAACCTGCAGTCCCTGTC
CTCAGACAATGCCACCATGGCCATGCAGCAGGCTATGATGGCTGCACATGATGACTCATTGGAT
GGGACAGAAGAAGAGGATGAGGATGAGATGGAAGAGGAGGAGGAGGAGGAGCTGGAGGAGGAGG
TCGACGAGCTGCAGACGACGAATGTCAGCGACCTGGGCTTGGAACACAGTGACTCCCTGGAGTA
GTCGGGCAGCCCAGATGGCACTGATCATCGAGCAGGAGAGGGGTGTCGCCGGGAGGCCTTCAGG
GTGGGGGGGAAGGGGACGTGGGCAGGAAGCACCGAGGGAGTTGGGCCCTAGCTTCCCCAAATCA
GTAGCTTGAAGAAAGGCAGAGGAGACACCTGTTCCTTCCCAACCACCGAGCTTCAACGAGGACC
CCAGTCCCACTTCCCCGGAACTGCCGAGGACTCTGTTTGGCGGGGCCAGTCGAGCAGCCTGTAT
GGAAAGACAGCAGTGAGATCTGGACTCACCAAATCCCTGAGGACAGATGGCACCCATGGCCCCC
ACCCATGGAAGGACTTGAGTCGTTTACAAGCCCTGCACTGTGAGGCAGATTGGTGCTGTTCGCA
GAGTGGGCCTTTGCTCCGGGGGCAGACTTAGAAGGAAGGGGAGAGACAAAGGGGGACTGAGTTT
CATCCCCAGAAGGTTCTCAGCTCCTTTGACAGACATTCAAGGGCAGGAGGGAGCCCCAGAGCAT
AACCAGTGGCCAGAGGAGTGGGAGGGCCTGAGGCATCACATCTTGCAGATCAGAATGGGATAGA
ATCCACCGGGCTCATCCCTCCAAGGCCCTGTCTCTGCGCACAGCAACCATGGACATGGGAGAGA
GGGATGGGAGCCACAGTCCCCTTCACTCTCTCCTGGAAACATTGTAAGCTGGTGGGCTCAACCT
GTGGGAGGTTAAGAGGAGTCCCTTCTGGGTTGACTCCAAGAGCCAAGGAGATGGCAGACCCTGG
GCTAGGAGCCATATCAAGGTGACTTTGAGGCCACAACTGTCCCTAGGTGGTCACAGAACTCAGC
TCCTGTAACAACAGGACAATGGTGTTTTACCCTAGATGCTCCCACCCTCAGTGCTCCAAACCCT
CCATAGACCTTCAGAGAAGGTGAAAACAGGTTATCTGGGAATCTTTCCACCCAGCGGGTCGCCA
CGGCCATCCTTCTGCTCCCAGGCTGGCTCCATCAGCCTCCAGCTTCCTTTCTTCATCCTGTCCT
TCAGGGAAGGCAGAAGAAACATTGGAAGGCATCTAGTCCAGTGGGAAGCCAGGGGTTGGAGAAG
GTGCTACATCCCCCTTCCCATCAATATCCAAAATGTGGGGGAGGGCCCAGAGAATGGCACCCGA
GAGCCTGCGGGGGTACCCACCCCACACACCCTGCTGTTCTAACCCTGCTGTCCACAGCCCTGGA
GGAACTGGGGCCCCTGGAAGGAGGAGGAGGCTCTCCACTGTCCACCCTAACACATACCCACCCA
CCCACCTTCCAGACCCCCTTGGTTGGCACCCGCCTCCTGTTCCCTCTCACCCCATGGCTGTGAA
TGACAGGACTGGTCACATGTGTGTTTTCCATTGGGTTTAATTTAATGGACGTGCAGTTTCATTT
GTAAATTGTGCATTAGCCATCTCCTTCAGTGGCAGGATGTGAGTGGCGACCTGGCTCAACTGGA
GGGGACCCGCGGGGCTTCCCCTCTGGGGCTTCCCCTCCCCCACCTGGTTGGGGTAGAACAAAAG
GATGGTCACTCTTTCGAGGTCTCCCTGAAATGAATGTATTTCTCCCCCAAAAGAGCTGATATTT
AATGTTTTAATAGGGATTTTTGAGAAACAAATAACCTTATTTATAATCTGGGTGATCCAATCAT
TTTTTACTCCCTTTTGATGCCATACATAGAGGAAAGTCTAGCTTTTTTGGCGTGAGACTTTTGC
AATGTGCAGTGGGATAAAATGCATTTCCTTTTCTGGTTCGTTTCTCTTGTTCACACACACACAC
ACACCCCGTTCCACTCACCACCTGGACAGGTGTCCCCCAGCACGGGCACACTGGCACACAGGTG
CCCACATCTCTTCCTCCCAGCCCCTCCACCTGCCTAATGTTATGCAACCTCCTTCTGATGTATC
CACCAAACCAGTACTGAATGTGGCCGAGACGTTTTCAGTAAATCTTATTACCTACCGTAA

hide sequence

RefSeq Acc Id:

XM_008021385 ⟹ XP_008019576

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	116,332,889 - 116,604,758 (+)	NCBI
Vero_WHO_p1.0	NW_023666043	9,519,897 - 9,788,949 (-)	NCBI

Sequence:

show sequence

GTCCCGAGCAGTGCTGGGAAGTATAGGCTGTGTTGTCACGCCGGTGTCAGTCTGATGAAGATTG
GCATCAGGTGAAGTCTGGAGCAGGACTTCTGAGGCTTTCTATCCTCCATGCCGCTCACTAGAAA
AGGGGCTGTGAACTGTCCTCCATGTGAATCAATCCCATGATGCAACATGCCTCCCCAGCCCCCG
CTCTGACGATGATGGCCACGCAGAATGTCCCGCCCCCACCCTACCAGGACAGCCCACAGATGAC
GGCAACCGCCCAGCCACCCTCCAAGGCCCAGGCTGTCCACATCTCTGCCCCCTCAGCTGCTGCC
AGCACACCTGTACCCAGTGCCCCCATCGACCCCCAGGCCCAGCTGGAGGCTGACAAGCGAGCTG
TGTACAGGCACCCTCTTTTCCCGCTCCTGACGCTGCTGTTTGAGAAATGTGAACAGGCCACCCA
GGGCTCTGAGTGCATCACCTCCGCCAGCTTTGATGTGGACATCGAGAACTTTGTCCACCAGCAG
GAGCAGGAGCACAAACCCTTCTTCAGCGATGACCCAGAACTGGACAATCTGATGGTGAAGGCAA
TCCAGGTCCTGAGAATCCACCTGCTGGAGCTGGAAAAAGTCAATGAACTCTGCAAGGACTTTTG
TAACCGTTACATCACCTGCCTCAAAACCAAGATGCACAGTGATAACCTGCTCAGGAATGACCTA
GGGGGGCCCTACTCCCCCAACCAGCCCTCCATCAACCTTCACTCACAGGACCTCCTGCAGAATT
CCCCCAATTCCATGTCTGGAGTCTCCAATAACCCCCAGGGAATTGTGGTCCCAGCCTCAGCGCT
CCAGCAGGGCAACATCGCCATGACAACCGTCAACTCACAAGTCGTGTCAGGTGGAGCCTTATAC
CAACCGGTTACCATGGTAACCTCCCAGGGTCAGGTGGTCACCCAAGCAATCCCCCAGGGAGCCA
TCCAGATCCAGAACACACAGGTTAACCTTGACCTCACCTCCCTCCTGGACAATGAGGATAAGAA
GTCCAAGAACAAACGAGGAGTCTTGCCCAAGCATGCCACCAATATAATGCGTTCTTGGCTCTTC
CAGCATCTCATGCACCCCTACCCCACGGAGGACGAGAAGAGGCAGATCGCAGCCCAGACCAACC
TCACCCTCCTGCAAGTAAATAACTGGTTCATCAATGCCCGGAGGCGCATCCTGCAGCCCATGCT
TGATGCCAGCAACCCAGACCCTGCTCCCAAAGCCAAGAAGATCAAGTCTCAGCACCGGCCCACC
CAAAGATTCTGGCCCAACTCCATCGCTGCAGGGGTGCTGCAGCAGCAGAGCGGTGCCCCAGGGA
CAAACCCCGATGGTTCCATCAACTTGGACAACCTGCAGTCCCTGTCCTCAGACAATGCCACCAT
GGCCATGCAGCAGGCTATGATGGCTGCACATGATGACTCATTGGATGGGACAGAAGAAGAGGAT
GAGGATGAGATGGAAGAGGAGGAGGAGGAGGAGCTGGAGGAGGAGGTCGACGAGCTGCAGACGA
CGAATGTCAGCGACCTGGGCTTGGAACACAGTGACTCCCTGGAGTAGTCGGGCAGCCCAGATGG
CACTGATCATCGAGCAGGAGAGGGGTGTCGCCGGGAGGCCTTCAGGGTGGGGGGGAAGGGGACG
TGGGCAGGAAGCACCGAGGGAGTTGGGCCCTAGCTTCCCCAAATCAGTAGCTTGAAGAAAGGCA
GAGGAGACACCTGTTCCTTCCCAACCACCGAGCTTCAACGAGGACCCCAGTCCCACTTCCCCGG
AACTGCCGAGGACTCTGTTTGGCGGGGCCAGTCGAGCAGCCTGTATGGAAAGACAGCAGTGAGA
TCTGGACTCACCAAATCCCTGAGGACAGATGGCACCCATGGCCCCCACCCATGGAAGGACTTGA
GTCGTTTACAAGCCCTGCACTGTGAGGCAGATTGGTGCTGTTCGCAGAGTGGGCCTTTGCTCCG
GGGGCAGACTTAGAAGGAAGGGGAGAGACAAAGGGGGACTGAGTTTCATCCCCAGAAGGTTCTC
AGCTCCTTTGACAGACATTCAAGGGCAGGAGGGAGCCCCAGAGCATAACCAGTGGCCAGAGGAG
TGGGAGGGCCTGAGGCATCACATCTTGCAGATCAGAATGGGATAGAATCCACCGGGCTCATCCC
TCCAAGGCCCTGTCTCTGCGCACAGCAACCATGGACATGGGAGAGAGGGATGGGAGCCACAGTC
CCCTTCACTCTCTCCTGGAAACATTGTAAGCTGGTGGGCTCAACCTGTGGGAGGTTAAGAGGAG
TCCCTTCTGGGTTGACTCCAAGAGCCAAGGAGATGGCAGACCCTGGGCTAGGAGCCATATCAAG
GTGACTTTGAGGCCACAACTGTCCCTAGGTGGTCACAGAACTCAGCTCCTGTAACAACAGGACA
ATGGTGTTTTACCCTAGATGCTCCCACCCTCAGTGCTCCAAACCCTCCATAGACCTTCAGAGAA
GGTGAAAACAGGTTATCTGGGAATCTTTCCACCCAGCGGGTCGCCACGGCCATCCTTCTGCTCC
CAGGCTGGCTCCATCAGCCTCCAGCTTCCTTTCTTCATCCTGTCCTTCAGGGAAGGCAGAAGAA
ACATTGGAAGGCATCTAGTCCAGTGGGAAGCCAGGGGTTGGAGAAGGTGCTACATCCCCCTTCC
CATCAATATCCAAAATGTGGGGGAGGGCCCAGAGAATGGCACCCGAGAGCCTGCGGGGGTACCC
ACCCCACACACCCTGCTGTTCTAACCCTGCTGTCCACAGCCCTGGAGGAACTGGGGCCCCTGGA
AGGAGGAGGAGGCTCTCCACTGTCCACCCTAACACATACCCACCCACCCACCTTCCAGACCCCC
TTGGTTGGCACCCGCCTCCTGTTCCCTCTCACCCCATGGCTGTGAATGACAGGACTGGTCACAT
GTGTGTTTTCCATTGGGTTTAATTTAATGGACGTGCAGTTTCATTTGTAAATTGTGCATTAGCC
ATCTCCTTCAGTGGCAGGATGTGAGTGGCGACCTGGCTCAACTGGAGGGGACCCGCGGGGCTTC
CCCTCTGGGGCTTCCCCTCCCCCACCTGGTTGGGGTAGAACAAAAGGATGGTCACTCTTTCGAG
GTCTCCCTGAAATGAATGTATTTCTCCCCCAAAAGAGCTGATATTTAATGTTTTAATAGGGATT
TTTGAGAAACAAATAACCTTATTTATAATCTGGGTGATCCAATCATTTTTTACTCCCTTTTGAT
GCCATACATAGAGGAAAGTCTAGCTTTTTTGGCGTGAGACTTTTGCAATGTGCAGTGGGATAAA
ATGCATTTCCTTTTCTGGTTCGTTTCTCTTGTTCACACACACACACACACCCCGTTCCACTCAC
CACCTGGACAGGTGTCCCCCAGCACGGGCACACTGGCACACAGGTGCCCACATCTCTTCCTCCC
AGCCCCTCCACCTGCCTAATGTTATGCAACCTCCTTCTGATGTATCCACCAAACCAGTACTGAA
TGTGGCCGAGACGTTTTCAGTAAATCTTATTACCTACCGTAA

hide sequence

RefSeq Acc Id:

XM_008021386 ⟹ XP_008019577

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	116,332,875 - 116,604,758 (+)	NCBI
Vero_WHO_p1.0	NW_023666043	9,519,897 - 9,788,961 (-)	NCBI

Sequence:

show sequence

CCTGTGCCGCTGACGTCCCGAGCAGTGCTGGGAAGTATAGGCTGTGTTGTCACGCCGGTGTCAG
TCTGATGAAGATTGGCATCAGGTGAAGTCTGGAGCAGGACTTCTGAGGCTTTCTATCCTCCATG
CCGCTCACTAGAAAAGGGGCTGTGAACTGTGCTTTGGCTCTAGCAGAGAGGGAGAAATTCTGGC
CCAGCTGGAAGTAGAAAGAGGGGAGTGACTCTCCTGAGGACCATCTCAGAGACCCCTGGGATCA
CCTGAACAATGACGGCAACCGCCCAGCCACCCTCCAAGGCCCAGGCTGTCCACATCTCTGCCCC
CTCAGCTGCTGCCAGCACACCTGTACCCAGTGCCCCCATCGACCCCCAGGCCCAGCTGGAGGCT
GACAAGCGAGCTGTGTACAGGCACCCTCTTTTCCCGCTCCTGACGCTGCTGTTTGAGAAATGTG
AACAGGCCACCCAGGGCTCTGAGTGCATCACCTCCGCCAGCTTTGATGTGGACATCGAGAACTT
TGTCCACCAGCAGGAGCAGGAGCACAAACCCTTCTTCAGCGATGACCCAGAACTGGACAATCTG
ATGGTGAAGGCAATCCAGGTCCTGAGAATCCACCTGCTGGAGCTGGAAAAAGTCAATGAACTCT
GCAAGGACTTTTGTAACCGTTACATCACCTGCCTCAAAACCAAGATGCACAGTGATAACCTGCT
CAGGAATGACCTAGGGGGGCCCTACTCCCCCAACCAGCCCTCCATCAACCTTCACTCACAGGAC
CTCCTGCAGAATTCCCCCAATTCCATGTCTGGAGTCTCCAATAACCCCCAGGGAATTGTGGTCC
CAGCCTCAGCGCTCCAGCAGGGCAACATCGCCATGACAACCGTCAACTCACAAGTCGTGTCAGG
TGGAGCCTTATACCAACCGGTTACCATGGTAACCTCCCAGGGTCAGGTGGTCACCCAAGCAATC
CCCCAGGGAGCCATCCAGATCCAGAACACACAGGTTAACCTTGACCTCACCTCCCTCCTGGACA
ATGAGGATAAGAAGTCCAAGAACAAACGAGGAGTCTTGCCCAAGCATGCCACCAATATAATGCG
TTCTTGGCTCTTCCAGCATCTCATGCACCCCTACCCCACGGAGGACGAGAAGAGGCAGATCGCA
GCCCAGACCAACCTCACCCTCCTGCAAGTAAATAACTGGTTCATCAATGCCCGGAGGCGCATCC
TGCAGCCCATGCTTGATGCCAGCAACCCAGACCCTGCTCCCAAAGCCAAGAAGATCAAGTCTCA
GCACCGGCCCACCCAAAGATTCTGGCCCAACTCCATCGCTGCAGGGGTGCTGCAGCAGCAGAGC
GGTGCCCCAGGGACAAACCCCGATGGTTCCATCAACTTGGACAACCTGCAGTCCCTGTCCTCAG
ACAATGCCACCATGGCCATGCAGCAGGCTATGATGGCTGCACATGATGACTCATTGGATGGGAC
AGAAGAAGAGGATGAGGATGAGATGGAAGAGGAGGAGGAGGAGGAGCTGGAGGAGGAGGTCGAC
GAGCTGCAGACGACGAATGTCAGCGACCTGGGCTTGGAACACAGTGACTCCCTGGAGTAGTCGG
GCAGCCCAGATGGCACTGATCATCGAGCAGGAGAGGGGTGTCGCCGGGAGGCCTTCAGGGTGGG
GGGGAAGGGGACGTGGGCAGGAAGCACCGAGGGAGTTGGGCCCTAGCTTCCCCAAATCAGTAGC
TTGAAGAAAGGCAGAGGAGACACCTGTTCCTTCCCAACCACCGAGCTTCAACGAGGACCCCAGT
CCCACTTCCCCGGAACTGCCGAGGACTCTGTTTGGCGGGGCCAGTCGAGCAGCCTGTATGGAAA
GACAGCAGTGAGATCTGGACTCACCAAATCCCTGAGGACAGATGGCACCCATGGCCCCCACCCA
TGGAAGGACTTGAGTCGTTTACAAGCCCTGCACTGTGAGGCAGATTGGTGCTGTTCGCAGAGTG
GGCCTTTGCTCCGGGGGCAGACTTAGAAGGAAGGGGAGAGACAAAGGGGGACTGAGTTTCATCC
CCAGAAGGTTCTCAGCTCCTTTGACAGACATTCAAGGGCAGGAGGGAGCCCCAGAGCATAACCA
GTGGCCAGAGGAGTGGGAGGGCCTGAGGCATCACATCTTGCAGATCAGAATGGGATAGAATCCA
CCGGGCTCATCCCTCCAAGGCCCTGTCTCTGCGCACAGCAACCATGGACATGGGAGAGAGGGAT
GGGAGCCACAGTCCCCTTCACTCTCTCCTGGAAACATTGTAAGCTGGTGGGCTCAACCTGTGGG
AGGTTAAGAGGAGTCCCTTCTGGGTTGACTCCAAGAGCCAAGGAGATGGCAGACCCTGGGCTAG
GAGCCATATCAAGGTGACTTTGAGGCCACAACTGTCCCTAGGTGGTCACAGAACTCAGCTCCTG
TAACAACAGGACAATGGTGTTTTACCCTAGATGCTCCCACCCTCAGTGCTCCAAACCCTCCATA
GACCTTCAGAGAAGGTGAAAACAGGTTATCTGGGAATCTTTCCACCCAGCGGGTCGCCACGGCC
ATCCTTCTGCTCCCAGGCTGGCTCCATCAGCCTCCAGCTTCCTTTCTTCATCCTGTCCTTCAGG
GAAGGCAGAAGAAACATTGGAAGGCATCTAGTCCAGTGGGAAGCCAGGGGTTGGAGAAGGTGCT
ACATCCCCCTTCCCATCAATATCCAAAATGTGGGGGAGGGCCCAGAGAATGGCACCCGAGAGCC
TGCGGGGGTACCCACCCCACACACCCTGCTGTTCTAACCCTGCTGTCCACAGCCCTGGAGGAAC
TGGGGCCCCTGGAAGGAGGAGGAGGCTCTCCACTGTCCACCCTAACACATACCCACCCACCCAC
CTTCCAGACCCCCTTGGTTGGCACCCGCCTCCTGTTCCCTCTCACCCCATGGCTGTGAATGACA
GGACTGGTCACATGTGTGTTTTCCATTGGGTTTAATTTAATGGACGTGCAGTTTCATTTGTAAA
TTGTGCATTAGCCATCTCCTTCAGTGGCAGGATGTGAGTGGCGACCTGGCTCAACTGGAGGGGA
CCCGCGGGGCTTCCCCTCTGGGGCTTCCCCTCCCCCACCTGGTTGGGGTAGAACAAAAGGATGG
TCACTCTTTCGAGGTCTCCCTGAAATGAATGTATTTCTCCCCCAAAAGAGCTGATATTTAATGT
TTTAATAGGGATTTTTGAGAAACAAATAACCTTATTTATAATCTGGGTGATCCAATCATTTTTT
ACTCCCTTTTGATGCCATACATAGAGGAAAGTCTAGCTTTTTTGGCGTGAGACTTTTGCAATGT
GCAGTGGGATAAAATGCATTTCCTTTTCTGGTTCGTTTCTCTTGTTCACACACACACACACACC
CCGTTCCACTCACCACCTGGACAGGTGTCCCCCAGCACGGGCACACTGGCACACAGGTGCCCAC
ATCTCTTCCTCCCAGCCCCTCCACCTGCCTAATGTTATGCAACCTCCTTCTGATGTATCCACCA
AACCAGTACTGAATGTGGCCGAGACGTTTTCAGTAAATCTTATTACCTACCGTAA

hide sequence

RefSeq Acc Id:

XM_038005015 ⟹ XP_037860943

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666043	9,519,897 - 9,723,432 (-)	NCBI

RefSeq Acc Id:

XM_038005016 ⟹ XP_037860944

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666043	9,519,897 - 9,723,433 (-)	NCBI

RefSeq Acc Id:

XM_038005017 ⟹ XP_037860945

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666043	9,519,897 - 9,723,432 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_008019575	(Get FASTA)	NCBI Sequence Viewer
	XP_008019576	(Get FASTA)	NCBI Sequence Viewer
	XP_008019577	(Get FASTA)	NCBI Sequence Viewer
	XP_037860943	(Get FASTA)	NCBI Sequence Viewer
	XP_037860944	(Get FASTA)	NCBI Sequence Viewer
	XP_037860945	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000015727
	ENSCSAP00000015727.1

RefSeq Acc Id:	XP_008019575 ⟸ XM_008021384
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4D8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_008019577 ⟸ XM_008021386
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_008019576 ⟸ XM_008021385
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4D8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000015727 ⟸ ENSCSAT00000000327

RefSeq Acc Id:	XP_037860944 ⟸ XM_038005016
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4D8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_037860945 ⟸ XM_038005017
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_037860943 ⟸ XM_038005015
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9S4D8 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000002312	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000000327.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Homeobox_KN_domain	UniProtKB/TrEMBL
	PKNOX/Meis_N	UniProtKB/TrEMBL
KEGG Report	csab:103248764	UniProtKB/TrEMBL
NCBI Gene	PKNOX2	ENTREZGENE
PANTHER	HOMEOBOX PROTEIN PKNOX2	UniProtKB/TrEMBL
	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	UniProtKB/TrEMBL
Pfam	Homeobox_KN	UniProtKB/TrEMBL
	Meis_PKNOX_N	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_2	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A0D9S4D8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD