CPD (carboxypeptidase D) - Rat Genome Database

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Gene: CPD (carboxypeptidase D) Chlorocebus sabaeus
Analyze
Symbol: CPD
Name: carboxypeptidase D
RGD ID: 18592401
Description: ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to interleukin-2 (ortholog); ASSOCIATED WITH genetic disease (ortholog); neurofibromatosis 1 (ortholog); FOUND IN nucleus (ortholog); perinuclear region of cytoplasm (ortholog); trans-Golgi network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11624,106,406 - 24,196,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1624,106,883 - 24,193,129 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660755,862,697 - 5,952,891 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CPD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11624,106,406 - 24,196,998 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1624,106,883 - 24,193,129 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660755,862,697 - 5,952,891 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CPD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381730,378,927 - 30,469,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1730,378,927 - 30,469,989 (+)EnsemblGRCh38hg38GRCh38
GRCh371728,705,945 - 28,797,007 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361725,730,110 - 25,819,825 (+)NCBINCBI36Build 36hg18NCBI36
Build 341725,730,109 - 25,819,825NCBI
Celera1725,567,489 - 25,657,199 (+)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1724,915,981 - 25,006,704 (+)NCBIHuRef
CHM1_11728,768,174 - 28,859,153 (+)NCBICHM1_1
T2T-CHM13v2.01731,323,558 - 31,414,615 (+)NCBIT2T-CHM13v2.0
Cpd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391176,668,034 - 76,737,834 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1176,669,250 - 76,737,844 (-)EnsemblGRCm39 Ensembl
GRCm381176,777,208 - 76,847,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1176,778,424 - 76,847,018 (-)EnsemblGRCm38mm10GRCm38
MGSCv371176,590,710 - 76,660,510 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361176,598,184 - 76,663,191 (-)NCBIMGSCv36mm8
Celera1184,282,160 - 84,345,782 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.05NCBI
Cpd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81062,121,681 - 62,185,638 (-)NCBIGRCr8
mRatBN7.21061,623,528 - 61,687,491 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1061,623,526 - 61,687,491 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1066,269,189 - 66,333,145 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01065,774,660 - 65,838,616 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01061,244,000 - 61,309,462 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01063,325,764 - 63,389,811 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1063,325,199 - 63,389,817 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01063,024,264 - 63,088,486 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41067,327,272 - 67,390,836 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11067,340,894 - 67,404,459 (+)NCBI
Celera1060,635,370 - 60,698,539 (-)NCBICelera
Cytogenetic Map10q24NCBI
Cpd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554812,889,156 - 2,951,495 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554812,885,243 - 2,951,574 (-)NCBIChiLan1.0ChiLan1.0
CPD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21933,983,409 - 34,070,840 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11735,864,051 - 35,951,350 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01726,302,112 - 26,389,049 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11726,821,641 - 26,908,252 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1726,821,641 - 26,908,257 (-)Ensemblpanpan1.1panPan2
CPD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1944,388,147 - 44,469,775 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl944,388,219 - 44,466,074 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha943,539,778 - 43,621,450 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0945,207,559 - 45,287,811 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl945,207,487 - 45,286,195 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1943,987,222 - 44,067,108 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0944,274,017 - 44,354,213 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0944,358,343 - 44,440,254 (+)NCBIUU_Cfam_GSD_1.0
Cpd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560243,502,080 - 43,576,174 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365386,379,999 - 6,454,122 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365386,380,046 - 6,454,117 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1246,462,265 - 46,533,022 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11246,462,203 - 46,533,032 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21248,551,808 - 48,622,822 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cpd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247862,866,059 - 2,941,879 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247862,866,020 - 2,940,615 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 13 60
Low 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000004842   ⟹   ENSCSAP00000003085
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1624,106,883 - 24,193,129 (+)Ensembl
RefSeq Acc Id: XM_037992668   ⟹   XP_037848596
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660755,862,697 - 5,952,891 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037848596 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000003085.1
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000003085   ⟸   ENSCSAT00000004842
RefSeq Acc Id: XP_037848596   ⟸   XM_037992668
- UniProtKB: A0A0D9R396 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000006796 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000004842.1 UniProtKB/TrEMBL
Gene3D-CATH Carboxypeptidase-like, regulatory domain UniProtKB/TrEMBL
  Zn peptidases UniProtKB/TrEMBL
InterPro CarboxyPept-like_regulatory UniProtKB/TrEMBL
  M14_CPD_II UniProtKB/TrEMBL
  M14_CPD_III UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
NCBI Gene CPD ENTREZGENE
PANTHER PROTEASE M14 CARBOXYPEPTIDASE UniProtKB/TrEMBL
  PTHR11532:SF73 UniProtKB/TrEMBL
Pfam CarboxypepD_reg UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
PRINTS CRBOXYPTASEA UniProtKB/TrEMBL
PROSITE CARBOXYPEPT_ZN_1 UniProtKB/TrEMBL
  CARBOXYPEPT_ZN_2 UniProtKB/TrEMBL
SMART Zn_pept UniProtKB/TrEMBL
Superfamily-SCOP SSF49464 UniProtKB/TrEMBL
  Zn-dependent exopeptidases UniProtKB/TrEMBL
UniProt A0A0D9R396 ENTREZGENE, UniProtKB/TrEMBL