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Gene: RSL24D1 (ribosomal L24 domain containing 1) Chlorocebus sabaeus

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Symbol:

RSL24D1

Name:

ribosomal L24 domain containing 1

RGD ID:

18589700

Description:

INVOLVED IN ribosomal large subunit biogenesis (inferred); ribosome biogenesis (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nucleolus (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable ribosome biogenesis protein RLP24

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	28,230,029 - 28,246,108 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	28,230,168 - 28,245,761 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	113,020,495 - 113,036,823 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

colorectal cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ribosomal large subunit biogenesis (IEA)

ribosome biogenesis (IEA)

Cellular Component

nucleolus (IEA)

nucleoplasm (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RSL24D1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	28,230,029 - 28,246,108 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	28,230,168 - 28,245,761 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	113,020,495 - 113,036,823 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

RSL24D1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	55,180,806 - 55,196,941 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	55,180,806 - 55,197,049 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	55,473,004 - 55,489,139 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	53,260,804 - 53,276,523 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	53,260,805 - 53,276,523	NCBI
Celera	15	32,362,100 - 32,377,819 (-)	NCBI		Celera
Cytogenetic Map	15	q21.3	NCBI
HuRef	15	32,298,775 - 32,314,494 (-)	NCBI		HuRef
CHM1_1	15	55,591,464 - 55,607,175 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	52,983,967 - 53,000,102 (-)	NCBI		T2T-CHM13v2.0

Rsl24d1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	73,020,751 - 73,030,615 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	73,020,708 - 73,030,615 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	73,113,469 - 73,123,333 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	73,113,426 - 73,123,333 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	72,961,276 - 72,971,140 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	72,910,601 - 72,920,465 (+)	NCBI		MGSCv36	mm8
MGSCv36	18	14,582,221 - 14,583,786 (+)	NCBI		MGSCv36	mm8
Celera	9	70,299,758 - 70,309,477 (+)	NCBI		Celera
Cytogenetic Map	9	D	NCBI
cM Map	9	40.1	NCBI

Rsl24d1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	82,733,627 - 82,742,632 (+)	NCBI		GRCr8
mRatBN7.2	8	73,852,991 - 73,861,996 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	73,852,996 - 73,862,001 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	79,375,879 - 79,384,893 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	77,648,526 - 77,657,539 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	75,485,869 - 75,494,883 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	79,792,587 - 79,801,592 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	79,792,587 - 79,801,594 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	73,286,203 - 73,295,207 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	77,877,455 - 77,886,461 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	77,896,508 - 77,905,515 (+)	NCBI
Celera	8	67,894,058 - 67,903,063 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Rsl24d1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	622,561 - 632,776 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	622,561 - 632,776 (+)	NCBI	ChiLan1.0	ChiLan1.0

RSL24D1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	44,447,786 - 44,463,551 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	48,628,162 - 48,644,443 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	34,152,671 - 34,168,532 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	52,476,528 - 52,492,296 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

RSL24D1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	20,610,526 - 20,628,202 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	20,615,806 - 20,628,084 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	20,569,204 - 20,586,788 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	20,761,347 - 20,778,967 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	20,758,107 - 20,778,705 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	20,697,416 - 20,715,019 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	20,787,627 - 20,805,441 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	20,919,254 - 20,936,917 (-)	NCBI		UU_Cfam_GSD_1.0

Rsl24d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	98,873,792 - 98,887,296 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	16,721,710 - 16,735,335 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	16,721,855 - 16,735,345 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RSL24D1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	116,612,330 - 116,629,141 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	116,612,335 - 116,629,161 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	129,150,002 - 129,166,843 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Rsl24d1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	6,358,907 - 6,373,039 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	6,358,877 - 6,369,114 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RSL24D1
493 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008016539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000009682 ⟹ ENSCSAP00000007793

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	26	28,230,168 - 28,245,761 (+)	Ensembl

RefSeq Acc Id:

XM_008016539 ⟹ XP_008014730

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	26	28,230,029 - 28,246,108 (+)	NCBI
Vero_WHO_p1.0	NW_023666048	113,020,495 - 113,036,823 (-)	NCBI

Sequence:

show sequence

CTAACTGATCCGCGAGAACTAAGGACGCTTGCCTTTTTCCGGTCGGGGGAAGGGGGAAGAAGGT
CACTTCCGGTGACGGGGCTGTGTCACTTCCTCTCAAGCTTGGCGTTTGTTTGGTCGGGTCCCAC
GCGGGTTCAACATGCGTATCGAGAAGTGTTATTTCTGTTCTGGGCCCATCTACCCTGGACACGG
CATGATGTTCGTCCGCAACGATTGCAAGGTGTTCAGATTTTGCAAATCTAAATGGCATAAAAAC
TTTAAAAAGAAGCGCAATCCTCGCAAAGTTAGGTGGACCAAGGCATTCCGGAAAGCAGCTGGTA
AAGAGCTTACAGTGGATAATTCATTTGAATTTGAAAAACGTAGAAATGAACCTATCAAATACCA
GCGAGAGCTATGGAATAAAACTATTGATGCAATGAAGAGAGTTGAAGAGATCAAACAGAAACGC
CAAGCTAAATTTATAATGAACAGATTGAAGAAAAATAAAGAGCTACAGAAAGTTCAGGATATCA
AAGAAGTCAAGCAAAACATCCATCTTATCCGAGCCCCTCTTGCAGGCAAAGGGAAGCAGTTGGA
AGAGAAAATGGTACAGCAGTTACAAGAGGATGTGGACATGGAAGATGCTCCTTAAAAATCTCTG
TAACCATTTCTTTTGTGTACATTTGAAAATACCCTTTGGATACTTGGAACTGCTAAATTATCTT
ATTTTTTACATAAGGTCACTTAAATGAAAAGTGATTAAAATACATCTTTCCTACATTGCCTTCT
ACATAACATCAGATATTACGGATGTTAGATTGCATCTCAGTGTTAAATCTTCACTGATAGATGT
ACTTAAGTAAATCATGAAAATTCTGCTTATAACTATAGAAGTGAATTGTGGATGTAAAATGGTT
ATGCCATTTGGATAATGGCACTAGGCAGCATTTGTATAGTAACTAATGGCAAAAATTCATGGCT
AGTGATGTATAAAATAAAATATTCTTTGCAGTAAAATACTCCCTTTGTTAATGTTATAGAAAAG
GGGGATACAAAAAGGAACTAACAATTTGTATGGCAGTATCAGATATTATTTTTGTTTTAATATT
TCCTGTTTTGGTTTATTTGCATCTTAGAAGAGCATAATGACATTGTTTGATGAAACCTACATTC
TGCTGGACTGTTTTGACCTGGTTTAACCCTTCTGATAGGTAGTTGTGGATGTTGGGGATGAGAA
CTGAATAATCTGCCTGGAGTGACACTACACTCTAGAATTTCCACTTTGGAGAATATTCAGTTCT
CACTTGTGATTCCTGGTAGAACAAACTTTATTTTTCTAGCCCAGCAATGATCTAGAAGCAGAGG
AATCCCAGTGCCTTTTAAAAGTTGTTATGTGGTTTTCTTTTAAAAAGCTGCTGATTTTGGAAAG
TAGAATTTATGGGTACAAGGTATGTTCATTATTTGTAAGTAAAATAAAACCATTTAAAAAGTAA
TGTGATATTTATTATTTAAAGGCACTAAACAAAGATATGAAGTATTGATTATCTGGAAGAAGAA
ATCTTCCTCCACACATCCCATTTAAGTAGGAGATACATTTAATTAAAGAGAAATAGATACTTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008014730	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000007793.1

RefSeq Acc Id:	XP_008014730 ⟸ XM_008016539
- UniProtKB:	A0A0D9RGQ4 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000007793 ⟸ ENSCSAT00000009682

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000011613	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000009682.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.170.20	UniProtKB/TrEMBL
InterPro	L24e/L24_sf	UniProtKB/TrEMBL
	Ribosomal_L24e-rel	UniProtKB/TrEMBL
	Ribosomal_L24e_CS	UniProtKB/TrEMBL
	TRASH_dom	UniProtKB/TrEMBL
KEGG Report	csab:103245593	UniProtKB/TrEMBL
NCBI Gene	RSL24D1	ENTREZGENE
PANTHER	PTHR10792	UniProtKB/TrEMBL
	RIBOSOME BIOGENESIS PROTEIN RLP24-RELATED	UniProtKB/TrEMBL
Pfam	Ribosomal_L24e	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_L24E	UniProtKB/TrEMBL
SMART	TRASH	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A0D9RGQ4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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