CAB39L (calcium binding protein 39 like) - Rat Genome Database

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Gene: CAB39L (calcium binding protein 39 like) Chlorocebus sabaeus
Analyze
Symbol: CAB39L
Name: calcium binding protein 39 like
RGD ID: 18585207
Description: ENCODES a protein that exhibits protein serine/threonine kinase activator activity (inferred); INVOLVED IN intracellular signal transduction (inferred); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-binding protein 39-like; LOC103214424; uncharacterized LOC103214424
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,226,012 - 27,314,413 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,225,946 - 27,314,318 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,526,353 - 16,661,366 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CAB39L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,226,012 - 27,314,413 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,225,946 - 27,314,318 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,526,353 - 16,661,366 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CAB39L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,308,650 - 49,444,064 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,308,650 - 49,444,064 (-)EnsemblGRCh38hg38GRCh38
GRCh371349,882,786 - 50,018,200 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361348,780,787 - 48,916,222 (-)NCBINCBI36Build 36hg18NCBI36
Build 341348,781,944 - 48,855,029NCBI
Celera1330,938,637 - 31,073,173 (-)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,676,584 - 30,811,804 (-)NCBIHuRef
CHM1_11349,850,328 - 49,985,647 (-)NCBICHM1_1
T2T-CHM13v2.01348,529,853 - 48,662,696 (-)NCBIT2T-CHM13v2.0
Cab39l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391459,678,400 - 59,786,353 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1459,678,421 - 59,823,213 (+)EnsemblGRCm39 Ensembl
GRCm381459,440,934 - 59,548,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1459,440,972 - 59,585,764 (+)EnsemblGRCm38mm10GRCm38
MGSCv371460,059,818 - 60,167,740 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361458,395,091 - 58,503,013 (+)NCBIMGSCv36mm8
Celera1457,241,282 - 57,350,443 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1431.48NCBI
Cab39l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,782,778 - 37,885,191 (+)NCBIGRCr8
mRatBN7.21533,606,588 - 33,710,518 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1533,606,694 - 33,743,545 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1535,483,282 - 35,571,440 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01536,633,958 - 36,722,120 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,081,902 - 35,170,109 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01539,745,124 - 39,849,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,759,257 - 39,870,208 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01543,566,520 - 43,670,759 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41538,552,234 - 38,640,594 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11538,567,933 - 38,656,288 (+)NCBI
Celera1533,327,289 - 33,415,479 (+)NCBICelera
Cytogenetic Map15p12NCBI
Cab39l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,780,839 - 2,889,769 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,781,714 - 2,899,857 (-)NCBIChiLan1.0ChiLan1.0
CAB39L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21450,746,287 - 50,884,238 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,397,524 - 49,535,900 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,446,643 - 30,584,608 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11349,198,143 - 49,335,634 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1349,198,143 - 49,288,816 (-)Ensemblpanpan1.1panPan2
CAB39L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,319,239 - 2,426,554 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,354,884 - 2,460,857 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,348,042 - 2,455,899 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,310,568 - 2,418,253 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,346,006 - 2,446,273 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,218,630 - 2,326,513 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,268,028 - 2,375,638 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,286,336 - 2,394,265 (+)NCBIUU_Cfam_GSD_1.0
Cab39l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,931,175 - 159,004,614 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,417,309 - 2,472,189 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,415,225 - 2,536,311 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAB39L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,313,796 - 18,401,235 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,297,669 - 18,400,398 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,612,809 - 18,715,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Cab39l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247485,252,994 - 5,411,002 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247485,238,235 - 5,408,654 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 52
Low 16 8
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015816   ⟹   ENSCSAP00000013744
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl327,225,946 - 27,314,318 (-)Ensembl
RefSeq Acc Id: XM_007960395   ⟹   XP_007958586
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1327,226,012 - 27,314,393 (-)NCBI
Vero_WHO_p1.0NW_02366605716,572,674 - 16,659,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007960396   ⟹   XP_007958587
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1327,226,012 - 27,314,413 (-)NCBI
Vero_WHO_p1.0NW_02366605716,572,674 - 16,659,434 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037986681   ⟹   XP_037842609
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605716,526,385 - 16,661,366 (+)NCBI
RefSeq Acc Id: XM_037986682   ⟹   XP_037842610
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605716,526,385 - 16,659,434 (+)NCBI
RefSeq Acc Id: XM_037986683   ⟹   XP_037842611
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605716,526,353 - 16,659,434 (+)NCBI
RefSeq Acc Id: XM_037986684   ⟹   XP_037842612
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605716,526,385 - 16,659,434 (+)NCBI
RefSeq Acc Id: XM_037986685   ⟹   XP_037842613
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605716,526,353 - 16,659,434 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_007958587   ⟸   XM_007960396
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007958586   ⟸   XM_007960395
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000013744   ⟸   ENSCSAT00000015816
RefSeq Acc Id: XP_037842611   ⟸   XM_037986683
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037842613   ⟸   XM_037986685
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037842609   ⟸   XM_037986681
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037842612   ⟸   XM_037986684
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037842610   ⟸   XM_037986682
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYQ5 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015816.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Mo25 UniProtKB/TrEMBL
KEGG Report csab:103214421 UniProtKB/TrEMBL
NCBI Gene CAB39L ENTREZGENE
PANTHER CALCIUM-BINDING PROTEIN 39-LIKE UniProtKB/TrEMBL
  PTHR10182 UniProtKB/TrEMBL
Pfam Mo25 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A0D9RYQ5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 CAB39L  calcium binding protein 39 like  LOC103214424  uncharacterized LOC103214424  Data merged from RGD:18576459 737654 PROVISIONAL