DERL3 (derlin 3) - Rat Genome Database

Name: DERL3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: DERL3 (derlin 3) Chlorocebus sabaeus

Analyze

Symbol:

DERL3

Name:

derlin 3

RGD ID:

18582852

Description:

ENCODES a protein that exhibits misfolded protein binding (inferred); protein-containing complex binding (inferred); signal recognition particle binding (inferred); INVOLVED IN endoplasmic reticulum unfolded protein response (inferred); ERAD pathway (inferred); negative regulation of retrograde protein transport, ER to cytosol (inferred); ASSOCIATED WITH agammaglobulinemia 2 (ortholog); atypical teratoid rhabdoid tumor (ortholog); Coffin-Siris syndrome 3 (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); Hrd1p ubiquitin ligase ERAD-L complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

derlin-3

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DERL3 (derlin 3)	NCBI	Ortholog
Mus musculus (house mouse):	Derl3 (Der1-like domain family, member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Derl3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Derl3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DERL3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DERL3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Derl3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DERL3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Derl3 (derlin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	6,944,291 - 6,949,948 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	6,947,403 - 6,949,845 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666100	423,257 - 428,076 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

agammaglobulinemia 2 (ISO)

atypical teratoid rhabdoid tumor (ISO)

Coffin-Siris syndrome 3 (ISO)

epilepsy (ISO)

genetic disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum unfolded protein response (IEA)

ERAD pathway (IEA)

negative regulation of retrograde protein transport, ER to cytosol (IEA)

proteasomal protein catabolic process (IEA)

protein N-linked glycosylation via asparagine (IEA)

response to stress (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

Hrd1p ubiquitin ligase ERAD-L complex (IEA)

membrane (IEA)

Molecular Function

misfolded protein binding (IEA)

protein binding (ISO)

protein-containing complex binding (IEA)

signal recognition particle binding (IEA)

ubiquitin-specific protease binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

DERL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	6,944,291 - 6,949,948 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	6,947,403 - 6,949,845 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666100	423,257 - 428,076 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

DERL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	23,834,503 - 23,839,006 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	23,834,503 - 23,839,128 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	24,176,690 - 24,181,193 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	22,506,690 - 22,511,201 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	22,501,245 - 22,505,755	NCBI
Celera	22	8,015,749 - 8,020,256 (-)	NCBI		Celera
Cytogenetic Map	22	q11.23	NCBI
HuRef	22	7,164,611 - 7,169,120 (-)	NCBI		HuRef
CHM1_1	22	24,188,905 - 24,193,409 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	24,281,689 - 24,286,190 (-)	NCBI		T2T-CHM13v2.0

Derl3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	75,729,232 - 75,731,775 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	75,729,247 - 75,731,775 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	75,893,398 - 75,895,941 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	75,893,413 - 75,895,941 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	75,356,143 - 75,358,686 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	75,337,114 - 75,339,657 (+)	NCBI		MGSCv36	mm8
Celera	10	76,938,087 - 76,940,630 (+)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	38.61	NCBI

Derl3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	12,753,926 - 12,766,478 (-)	NCBI		GRCr8
mRatBN7.2	20	12,754,490 - 12,768,454 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	12,763,543 - 12,767,027 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	13,471,091 - 13,473,652 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	12,832,012 - 12,834,573 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	13,303,805 - 13,306,366 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	13,692,102 - 13,707,645 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	13,704,314 - 13,706,205 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	15,858,297 - 15,863,183 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	13,163,287 - 13,165,848 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	14,255,751 - 14,258,312 (-)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Derl3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	8,415,839 - 8,421,762 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	8,415,868 - 8,418,753 (+)	NCBI	ChiLan1.0	ChiLan1.0

DERL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	33,565,313 - 33,570,562 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	36,301,966 - 36,307,067 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	4,589,448 - 4,594,628 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	22,673,908 - 22,678,451 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	22,673,908 - 22,678,444 (-)	Ensembl	panpan1.1		panPan2

DERL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	28,688,307 - 28,690,400 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	28,688,106 - 28,690,400 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	27,761,400 - 27,763,725 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	30,093,061 - 30,095,386 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	30,093,129 - 30,095,386 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	28,174,380 - 28,176,705 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	27,792,314 - 27,794,639 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	28,780,177 - 28,785,974 (+)	NCBI		UU_Cfam_GSD_1.0

Derl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	141,478,848 - 141,482,070 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	1,271,797 - 1,275,214 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	1,271,980 - 1,275,212 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DERL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	49,871,218 - 49,877,672 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	49,871,077 - 49,875,022 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	53,313,332 - 53,315,464 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Derl3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	10,357,627 - 10,359,779 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	10,357,560 - 10,359,779 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	20		20
Low	16	20	40
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007975100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007975111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037995403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037995404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000009368 ⟹ ENSCSAP00000007486

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	19	6,947,403 - 6,949,845 (-)	Ensembl

RefSeq Acc Id:

XM_007975104 ⟹ XP_007973295

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	19	6,947,596 - 6,949,941 (-)	NCBI
Vero_WHO_p1.0	NW_023666100	423,293 - 425,468 (+)	NCBI

Sequence:

show sequence

GCCCCTTCCTGTTTTGCCTCGCCTGCTCGGGTCTTCGCTCCTCTAATCCTACGATCTTAGCCCC
GCCCCCGTGGTGTCGTGGGTCCTCGCTACTGGTCCTCTCCTAGAAAGCCGCGAAGTGACCAGTT
CCTCATTGGCCACACGTTCTCCCGCGCCACCACCGCAGCCACAACAACCGCCACGTGCTCAACC
TTGGCGCCTGCCCATTGGCCACCAGCCTCTACCCGCCCACTCTCCCTTTCCGCCCCTAATTGCC
CTCTTCCTCCTTCCATTGGCTGCCGGGCTCGGGGGCTCTCTTTTCAGCTGGGGCGCGCAGCGCC
TCGGATGCGGATTGGTAGAAGGCGGGGCTGGGAGGCGGGTTAAAGAGCGCGTTGCTGGCTGGGC
CACGCGTGCTTGAGAAGGTTCAATGGCGTGGCAGGGACTAGCGGCCGAGTTCCTGCAGGTGCCG
GCGGTGACGCGGGCTTACACCGCAGCCTGTGTCCTCACCACTGCGGCGGTGCAGCTGGAGCTCC
TGAGCCCGTTTCAACTCTACTTCAACCCGCACCTTGTGTTCCGGAAGTTCCAGGTCTGGAGACT
CGTCACCAACTTCCTCTTTTTCGGGCCCCTGGGATTCAGCTTCTTCTTCAACATACTCTTCGTG
TTCCGCTACTGCCGCATGCTGGAAGAGGGCTCCTTCCGCGGCCGCACGGCCGACTTCGTCTTCA
TGTTTCTCTTCGGGGGCGTCCTTATGACCCTGCTGGGATTCCTGGGCAGCCTGTTCTTCCTGGG
CCAGGCCCTCATGGCCATGTTGGTGTACGTGTGGAGCCGCCGCAGCCCTCGGGTGAGGGTCAAC
TTCTTCGGCCTGTTCACTTTCCAGGCACCGTTCCTGCCTTGGGCACTCATGGGCTTCTCGCTGC
TGCTGGGCAACTCCATCCTCGTGGACCTGCTGGGTGAGCCTCCTGGTACATCCAGTCCACCCCA
GGCTGGCCACTCCCCTCAGGACACGCTGCTTATGCCCTGGGGCCCCTCTCCCATCCGTGCTGGA
GCTCTGTGCACATCTGGACCTCTCATCTGGCTCCATCCCCATCTCCCTGCCCTCCCAGCTGCTG
TGCTCTTACAGCCCCTCAAGCCACCTGGCCCACATAATTTGCATCTTCAGGGCTGATCTGCTGA
TGCTTTCGTGGTCCTAATGGGGGTGGGGATGGGCGGGTCAGGGTTCCTGCCTCATGGCTCCCAC
TCCTCCACTATTCTCAGGCCCGCCCCTCCCTGTGTCCTGTCTGCTTCTGGGCCCTTTAAGCTTG
TCTTTCAGGGCCCACCCTGGGCTGACACTCTGTGCAAGATTTTGAGGAACTCATGCTCTGGGGC
CTGCAGGGCCACTAGGCTGTGGATGAGGGCCTGGGGCAGGTTCTGCTGGTCTAGGACTCTGGGC
TGTGGAGGGTGACCCTGCAGTCCGTGGCTGTCTCACAGGGATTGCCGTGGGCCACATCTACTAC
TTCCTGGAGGATGTCTTCCCCAACCAGCCTGGAGGCAAGAGGCTCCTGCTGACCCCTGGCTTCC
TGT

hide sequence

RefSeq Acc Id:

XM_007975107 ⟹ XP_007973298

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	19	6,947,265 - 6,949,918 (-)	NCBI
Vero_WHO_p1.0	NW_023666100	423,318 - 428,076 (+)	NCBI

Sequence:

show sequence

TGCTCGGGTCTTCGCTCCTCTAATCCTACGATCTTAGCCCCGCCCCCGTGGTGTCGTGGGTCCT
CGCTACTGGTCCTCTCCTAGAAAGCCGCGAAGTGACCAGTTCCTCATTGGCCACACGTTCTCCC
GCGCCACCACCGCAGCCACAACAACCGCCACGTGCTCAACCTTGGCGCCTGCCCATTGGCCACC
AGCCTCTACCCGCCCACTCTCCCTTTCCGCCCCTAATTGCCCTCTTCCTCCTTCCATTGGCTGC
CGGGCTCGGGGGCTCTCTTTTCAGCTGGGGCGCGCAGCGCCTCGGATGCGGATTGGTAGAAGGC
GGGGCTGGGAGGCGGGTTAAAGAGCGCGTTGCTGGCTGGGCCACGCGTGCTTGAGAAGGTTCAA
TGGCGTGGCAGGGACTAGCGGCCGAGTTCCTGCAGGTGCCGGCGGTGACGCGGGCTTACACCGC
AGCCTGTGTCCTCACCACTGCGGCGGTGCAGCTGGAGCTCCTGAGCCCGTTTCAACTCTACTTC
AACCCGCACCTTGTGTTCCGGAAGTTCCAGGTCTGGAGACTCGTCACCAACTTCCTCTTTTTCG
GGCCCCTGGGATTCAGCTTCTTCTTCAACATACTCTTCGTGTTCCGCTACTGCCGCATGCTGGA
AGAGGGCTCCTTCCGCGGCCGCACGGCCGACTTCGTCTTCATGTTTCTCTTCGGGGGCGTCCTT
ATGACCCTGCTGGGATTCCTGGGCAGCCTGTTCTTCCTGGGCCAGGCCCTCATGGCCATGTTGG
TGTACGTGTGGAGCCGCCGCAGCCCTCGGGTGAGGGTCAACTTCTTCGGCCTGTTCACTTTCCA
GGCACCGTTCCTGCCTTGGGCACTCATGGGCTTCTCGCTGCTGCTGGGCAACTCCATCCTCGTG
GACCTGCTGGGGATTGCCGTGGGCCACATCTACTACTTCCTGGAGGATGTCTTCCCCAACCAGC
CTGGAGGCAAGAGGCTCCTGCTGACCCCTGGCTTCCTAAAGCTGCTCCTGGATGCCCCTGCAGA
AGACCCCAATTACCTGCCCCTCCCTGAGGAACAGCCAGGACCCCATCTGCCACCCCCGCAGCAG
TGACCCCCACTGAGGGCCAGGCCTAAGAGGCTTCTGGCAGCTTCCATCCTACCTGTGATCCCTA
CTTGGGGCAGAAAAAACCCATCCTAAAGGCTGGGTCCATGCAAGGGCCCACCCGAATAAACAGA
ATGACCTGCAGTC

hide sequence

RefSeq Acc Id:

XM_007975108 ⟹ XP_007973299

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	19	6,947,265 - 6,949,936 (-)	NCBI
Vero_WHO_p1.0	NW_023666100	423,302 - 428,076 (+)	NCBI

Sequence:

show sequence

TTCCTGTTTTGCCTCGCCTGCTCGGGTCTTCGCTCCTCTAATCCTACGATCTTAGCCCCGCCCC
CGTGGTGTCGTGGGTCCTCGCTACTGGTCCTCTCCTAGAAAGCCGCGAAGTGACCAGTTCCTCA
TTGGCCACACGTTCTCCCGCGCCACCACCGCAGCCACAACAACCGCCACGTGCTCAACCTTGGC
GCCTGCCCATTGGCCACCAGCCTCTACCCGCCCACTCTCCCTTTCCGCCCCTAATTGCCCTCTT
CCTCCTTCCATTGGCTGCCGGGCTCGGGGGCTCTCTTTTCAGCTGGGGCGCGCAGCGCCTCGGA
TGCGGATTGGTAGAAGGCGGGGCTGGGAGGCGGGTTAAAGAGCGCGTTGCTGGCTGGGCCACGC
GTGCTTGAGAAGGTTCAATGGCGTGGCAGGGACTAGCGGCCGAGTTCCTGCAGGTGCCGGCGGT
GACGCGGGCTTACACCGCAGCCTGTGTCCTCACCACTGCGGCGGTGCAGCTGGAGCTCCTGAGC
CCGTTTCAACTCTACTTCAACCCGCACCTTGTGTTCCGGAAGTTCCAGGTCTGGAGACTCGTCA
CCAACTTCCTCTTTTTCGGGCCCCTGGGATTCAGCTTCTTCTTCAACATACTCTTCGTGTTCCG
CTACTGCCGCATGCTGGAAGAGGGCTCCTTCCGCGGCCGCACGGCCGACTTCGTCTTCATGTTT
CTCTTCGGGGGCGTCCTTATGACCCTGCTGGGATTCCTGGGCAGCCTGTTCTTCCTGGGCCAGG
CCCTCATGGCCATGTTGGTGTACGTGTGGAGCCGCCGCAGCCCTCGGGTGAGGGTCAACTTCTT
CGGCCTGTTCACTTTCCAGGCACCGTTCCTGCCTTGGGCACTCATGGGCTTCTCGCTGCTGCTG
GGCAACTCCATCCTCGTGGACCTGCTGGATGGATCCCCACCGATGGGGACGTGTGCTGGCCTCT
GCTCAACACGGGCCCCTCCCCACAGAAAGCTGCTCCTGGATGCCCCTGCAGAAGACCCCAATTA
CCTGCCCCTCCCTGAGGAACAGCCAGGACCCCATCTGCCACCCCCGCAGCAGTGACCCCCACTG
AGGGCCAGGCCTAAGAGGCTTCTGGCAGCTTCCATCCTACCTGTGATCCCTACTTGGGGCAGAA
AAAACCCATCCTAAAGGCTGGGTCCATGCAAGGGCCCACCCGAATAAACAGAATGACCTGCAGT
C

hide sequence

RefSeq Acc Id:

XM_007975109 ⟹ XP_007973300

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	19	6,945,103 - 6,949,932 (-)	NCBI
Vero_WHO_p1.0	NW_023666100	423,304 - 428,076 (+)	NCBI

Sequence:

show sequence

TGTTTTGCCTCGCCTGCTCGGGTCTTCGCTCCTCTAATCCTACGATCTTAGCCCCGCCCCCGTG
GTGTCGTGGGTCCTCGCTACTGGTCCTCTCCTAGAAAGCCGCGAAGTGACCAGTTCCTCATTGG
CCACACGTTCTCCCGCGCCACCACCGCAGCCACAACAACCGCCACGTGCTCAACCTTGGCGCCT
GCCCATTGGCCACCAGCCTCTACCCGCCCACTCTCCCTTTCCGCCCCTAATTGCCCTCTTCCTC
CTTCCATTGGCTGCCGGGCTCGGGGGCTCTCTTTTCAGCTGGGGCGCGCAGCGCCTCGGATGCG
GATTGGTAGAAGGCGGGGCTGGGAGGCGGGTTAAAGAGCGCGTTGCTGGCTGGGCCACGCGTGC
TTGAGAAGGTTCAATGGCGTGGCAGGGACTAGCGGCCGAGTTCCTGCAGGTGCCGGCGGTGACG
CGGGCTTACACCGCAGCCTGTGTCCTCACCACTGCGGCGGTGCAGCTGGAGCTCCTGAGCCCGT
TTCAACTCTACTTCAACCCGCACCTTGTGTTCCGGAAGTTCCAGGTCTGGAGACTCGTCACCAA
CTTCCTCTTTTTCGGGCCCCTGGGATTCAGCTTCTTCTTCAACATACTCTTCGTGTTCCGCTAC
TGCCGCATGCTGGAAGAGGGCTCCTTCCGCGGCCGCACGGCCGACTTCGTCTTCATGTTTCTCT
TCGGGGGCGTCCTTATGACCCTGCTGGGATTCCTGGGCAGCCTGTTCTTCCTGGGCCAGGCCCT
CATGGCCATGTTGGTGTACGTGTGGAGCCGCCGCAGCCCTCGGGTGAGGGTCAACTTCTTCGGC
CTGTTCACTTTCCAGGCACCGTTCCTGCCTTGGGCACTCATGGGCTTCTCGCTGCTGCTGGGCA
ACTCCATCCTCGTGGACCTGCTGGGGATTGCCGTGGGCCACATCTACTACTTCCTGGAGGATGT
CTTCCCCAACCAGCCTGGAGGCAAGAGGCTCCTGCTGACCCCTGGCTTCCTGGGACTTCAGAGC
AGCAAGGCCCCAGCTGGCAGTAGCCTGACCATCTGAACACAGCAGAGCCAGGGCGGCCCAGGGA
CAGCAGGAGAGCTCACCGCACCTTTCTGAGGCCAAGCAAGGGGAGCAGGGTTAGGGCTGTTGCT
GAAAGGCAGAGAGCCTCTGCCCTGAGCCTCACAGCCACTCTTCTCAGCTCTCTGGGTCTGGAAG
GAGAACAGGCTGAGGGGAGCTGAGGTGCTACCAGAAGCCCCATTCACCCTTACCCGTCCACCTG
GGAATCTGAGGCAGAGGAGGGCGAGGCCTGTGTGCCAGCCTTGTTCACATGCCACCTTTGTCCC
CCCAAGCCCCAGCCCCACTTCTGGCTCTCATTATTTTTAATGCTAAAACTTTGAAGAAATTGAA

hide sequence

RefSeq Acc Id:

XM_037995403 ⟹ XP_037851331

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666100	423,302 - 428,076 (+)	NCBI

RefSeq Acc Id:

XM_037995404 ⟹ XP_037851332

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666100	423,257 - 425,468 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007973295	(Get FASTA)	NCBI Sequence Viewer
	XP_007973298	(Get FASTA)	NCBI Sequence Viewer
	XP_007973299	(Get FASTA)	NCBI Sequence Viewer
	XP_007973300	(Get FASTA)	NCBI Sequence Viewer
	XP_037851331	(Get FASTA)	NCBI Sequence Viewer
	XP_037851332	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000007486
	ENSCSAP00000007486.1

RefSeq Acc Id:	XP_007973300 ⟸ XM_007975109
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_007973299 ⟸ XM_007975108
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_007973298 ⟸ XM_007975107
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RFU7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007973295 ⟸ XM_007975104
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSCSAP00000007486 ⟸ ENSCSAT00000009368

RefSeq Acc Id:	XP_037851332 ⟸ XM_037995404
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_037851331 ⟸ XM_037995403
- Peptide Label:	isoform X3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000011282	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000009368.1	UniProtKB/TrEMBL
InterPro	DER1	UniProtKB/TrEMBL
	Rhomboid-like_sf	UniProtKB/TrEMBL
NCBI Gene	DERL3	ENTREZGENE
PANTHER	DER1-LIKE PROTEIN, DERLIN	UniProtKB/TrEMBL
	DERLIN-3	UniProtKB/TrEMBL
Pfam	DER1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF144091	UniProtKB/TrEMBL
UniProt	A0A0D9RFU7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar