UPF3A (UPF3A regulator of nonsense mediated mRNA decay)

Gene: UPF3A (UPF3A regulator of nonsense mediated mRNA decay) Chlorocebus sabaeus

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Symbol:

UPF3A

Name:

UPF3A regulator of nonsense mediated mRNA decay

RGD ID:

18578541

Description:

ENCODES a protein that exhibits mRNA binding (inferred); nucleic acid binding (inferred); telomeric DNA binding (inferred); INVOLVED IN in utero embryonic development (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); positive regulation of mRNA cis splicing, via spliceosome (ortholog); ASSOCIATED WITH factor X deficiency (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); exon-exon junction complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

regulator of nonsense transcripts 3A; UPF3 regulator of nonsense transcripts homolog A

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	92,066,229 - 92,089,868 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	92,066,248 - 92,088,976 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	49,360,990 - 49,384,490 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

factor X deficiency (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

in utero embryonic development (IEA,ISO)

negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (IEA)

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (IEA,ISO)

positive regulation of mRNA cis splicing, via spliceosome (IEA,ISO)

positive regulation of translation (IEA)

spermatogenesis (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

exon-exon junction complex (IEA)

intracellular membrane-bounded organelle (IEA)

neuron projection (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

Molecular Function

mRNA binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

telomeric DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

UPF3A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	92,066,229 - 92,089,868 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	92,066,248 - 92,088,976 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	49,360,990 - 49,384,490 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

UPF3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	114,281,601 - 114,305,817 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	114,281,601 - 114,305,817 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	115,047,076 - 115,071,292 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	114,065,180 - 114,089,385 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	114,065,179 - 114,089,383	NCBI
Celera	13	95,719,450 - 95,743,911 (+)	NCBI		Celera
Cytogenetic Map	13	q34	NCBI
HuRef	13	95,309,726 - 95,333,660 (+)	NCBI		HuRef
CHM1_1	13	115,015,732 - 115,039,962 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	113,490,661 - 113,514,877 (+)	NCBI		T2T-CHM13v2.0

Upf3a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	13,834,636 - 13,848,723 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	13,835,615 - 13,849,193 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	13,785,055 - 13,798,723 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	13,785,615 - 13,799,193 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	13,785,615 - 13,798,538 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	13,785,609 - 13,799,165 (+)	NCBI		MGSCv36	mm8
Celera	8	13,951,656 - 13,964,579 (+)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	6.38	NCBI

Upf3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	82,459,651 - 82,470,686 (-)	NCBI		GRCr8
mRatBN7.2	16	75,757,442 - 75,768,478 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	75,757,441 - 75,769,345 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	81,038,094 - 81,049,129 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	84,491,624 - 84,502,061 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	79,741,309 - 79,752,356 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	81,521,084 - 81,532,512 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	81,521,073 - 81,532,520 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	81,009,176 - 81,020,604 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	80,612,505 - 80,623,540 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	80,612,769 - 80,623,805 (-)	NCBI
Celera	16	73,566,324 - 73,577,359 (-)	NCBI		Celera
Cytogenetic Map	16	q12.5	NCBI

Upf3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955404	25,556 - 36,730 (-)	NCBI	ChiLan1.0	ChiLan1.0

UPF3A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	115,777,762 - 115,802,131 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	114,458,047 - 114,482,606 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	95,349,449 - 95,373,984 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	114,416,454 - 114,439,586 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	114,415,784 - 114,438,692 (+)	Ensembl	panpan1.1		panPan2

UPF3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	61,320,575 - 61,373,082 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	61,320,451 - 61,345,839 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	61,032,216 - 61,084,507 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	62,007,564 - 62,059,865 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	22	61,445,161 - 61,478,456 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	61,453,315 - 61,503,788 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	61,480,547 - 61,514,061 (+)	NCBI		UU_Cfam_GSD_1.0

Upf3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	196,196,490 - 196,210,608 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004937030	243,104 - 258,355 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UPF3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	79,118,603 - 79,136,222 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	79,117,708 - 79,137,083 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Upf3a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624793	136,642 - 151,692 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624793	134,607 - 151,730 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	1	60
Low		19
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007961031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007961035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038007937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038007938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038007939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000015478 ⟹ ENSCSAP00000013417

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	3	92,066,248 - 92,088,976 (+)	Ensembl

RefSeq Acc Id:

XM_007961031 ⟹ XP_007959222

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	3	92,066,229 - 92,089,867 (+)	NCBI
Vero_WHO_p1.0	NW_023666046	49,360,990 - 49,384,490 (+)	NCBI

Sequence:

show sequence

GCTCGGCGGAGAGTGCGGGATGCGCTCGGAAAAGGAGGGGGCCGGAGGCCCTAGGGCGGCAGTT
GCCGCGCGGGGACCGTGCGGGAGGGAAAAGCTGTCGGCCCTAGAAGTACAGTTCCACCGCGACT
CGCCGCAGCGGGAAGCTGAGACGCAGCCAACCTCGTCCTCCGGTTGCGGGGGCGGTGCGGGCAA
ACCTCGCGAGGAGAAGAGGACGGCCCTGAGTAAGGTGGTCATCCGCCGCCTGCCCCCGGGCCTC
ACCAAGGAGCAGCTGGAGGAGCAGCTGCGCCCGCTGCCAGCGCACGACTACTTCGAGTTCTTCG
CCGCCGACCTGAGTCTTTATCCTCATCTCTACTCAAGAGCATACATTAATTTTAGGAATCCTGA
TGACATCCTTCTTTTTAGAGATCGTTTTGATGGATATATCTTCCTTGACAGCAAAGGCCTAGAA
TATCCTGCAGTGGTAGAGTTTGCTCCGTTCCAGAAGATAGCCAAAAAGAAGCTGAAAAAAAAAG
ATGCCAAGACTGGAAGCATCGAAGATGATCCAGAATATAAGAAGTTTTTAGAAACTTACTGTGT
GGAGGAAGAGAAGACCAGCGCCAACCCTGAGACTCTGCTGGGGGAGATGGAGGCCAAGACAAGA
GAGCTCATTGCTAGAAGAACAACACCTCTTTTGGAATATATTAAAAACAGAAAATTAGAAAAGC
AGAGAATTCGAGAAGAGAAGCGAGAAGAACGGAGGAGGAGAGAGTTAGAAAAGAAACGTTTGCG
GGAAGAGGAAAAAAGAAGAAGAAGAGAAGAAGAAAGATGCAAAAAAAAGGAGGCAGATAAACAG
AAGAAAATTGCAGAGAAAGAAGTAAGGATTAAGCTTCTTAAAAAACCAGAAAAGGGAGAGGAAC
CAACCGCAGAGAAACCGAAAGAAAGAGGAGAGGAGATTGATACTGGAGGTGGCAGGCCCGTGGA
AGGCTCGCTGGAGGAGTCCCAGGAGATGTCACGCAGCGGCAGTGATAGAGAGTACAGGGATCTG
GAGAGATCTCAAGAAAAAGAATGTGAAGCACAAAGACACCATGTGGATGACGGCAGGAGGCACA
GAGCTCCCCACGAGCCTGACTGGCTTTCCAGAAGGAGTGAGGATGAGCAGAGATGGGGGAAAGG
ACCTGGCCAAGACAGAGGGAAGAAGGGGAGCCAGGACAGCGGGGCTCCGGGGCAGGCCATGGAG
AGACTGGGAAGAGCGCAGAGGTGTGACGACGGTCCGGCACCCAGAAAGGAGCGACTGGCAAACA
AGGACCGGCCGGCCTTGCAGCTGTATGATCCAGGAGCTCGCTTCCGAGCACGAGAGTGTGGCGG
AAGTGGGAGGATCTGCAAGGCAGAAGGTTCGGGGACTGGTCCTGAGAAGAGGGAAGAGGCAGAG
TGAGTCACTGGGTGCACCTGGCCTCCATGGACAAGCGAAGGAATCTCAGAAACGTGTAAAGGAC
CCCGAGTGTGACTGGAAAGGAGAACTTACTCCTTACCAGGAAACTGGAAGCTAAAAATACAGAG
GGTGACATAGAAACACGCAGACACCATTCTAAAGAAAGTAGTGATCTTGTGTTAAATTGAGCAG
AATTCTCACGGATTTTACCATTCCTGTTATAAACTAATATTTGTTTTTCAGCCAAAACAGAAAA
TGATTTTCACTGGACAGTAGAAAAATATGTGTAAAATAGGGAAGAAAGTTAGTATTGGATCAGT
GTGAGTCCTGAAGCACTTTCAGTGCTGTGAGAACGACATCCAGTGTGGGTTTCATTCATTGACA
GGCAGAGGAGCTGTCAGTCTCTCGTGCCTCTCGGTGGCCTCTGAGCTGTGCTGTCGAATAGAGT
AGTTCTTGTTTGTTACAGCCTCCGTGCGTCAGCCATGCCTGCAGAGTGTGCTGTGTTTTAGTCC
TGGTAGGAATATATACCAGAGTTCCCAGTATTTAAAACCCAACAGCTTCAACTATTGCCCTTTC
AACAGTTTTGCCACTGACCGGATGAAAATGGTTCCACAGTCTTTGGATGGATGGATTTGTGGTT
TGTAACCATTACGGTTTAAACCATGGTTTAAGAATTTGCCCAAATAACAGAAATTTTGTTTGGG
AAGGGATAAACTAGGTATAGCATATAGAGCCTGTCTTTGAGTTTTAGATACTTTATTTGTAAAT
AACTTAAAATAGCTTTCTGAAACCGTGCATTCTACAGTTTCTTGCTTTCAGTGAAATTGTTAAA
TGTCAATGTCTTTTTGGCACTGCGATTTTAACCATTTATTAAATACAAGTTTTGTTAAAGAA

hide sequence

RefSeq Acc Id:

XM_007961033 ⟹ XP_007959224

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	3	92,066,229 - 92,089,867 (+)	NCBI
Vero_WHO_p1.0	NW_023666046	49,360,990 - 49,384,490 (+)	NCBI

Sequence:

show sequence

GCTCGGCGGAGAGTGCGGGATGCGCTCGGAAAAGGAGGGGGCCGGAGGCCCTAGGGCGGCAGTT
GCCGCGCGGGGACCGTGCGGGAGGGAAAAGCTGTCGGCCCTAGAAGTACAGTTCCACCGCGACT
CGCCGCAGCGGGAAGCTGAGACGCAGCCAACCTCGTCCTCCGGTTGCGGGGGCGGTGCGGGCAA
ACCTCGCGAGGAGAAGAGGACGGCCCTGAGTAAGGTGGTCATCCGCCGCCTGCCCCCGGGCCTC
ACCAAGGAGCAGCTGGAGGAGCAGCTGCGCCCGCTGCCAGCGCACGACTACTTCGAGTTCTTCG
CCGCCGACCTGAGTCTTTATCCTCATCTCTACTCAAGAGCATACATTAATTTTAGGAATCCTGA
TGACATCCTTCTTTTTAGAGATCGTTTTGATGGATATATCTTCCTTGACAGCAAAGATCCAGAA
TATAAGAAGTTTTTAGAAACTTACTGTGTGGAGGAAGAGAAGACCAGCGCCAACCCTGAGACTC
TGCTGGGGGAGATGGAGGCCAAGACAAGAGAGCTCATTGCTAGAAGAACAACACCTCTTTTGGA
ATATATTAAAAACAGAAAATTAGAAAAGCAGAGAATTCGAGAAGAGAAGCGAGAAGAACGGAGG
AGGAGAGAGTTAGAAAAGAAACGTTTGCGGGAAGAGGAAAAAAGAAGAAGAAGAGAAGAAGAAA
GATGCAAAAAAAAGGAGGCAGATAAACAGAAGAAAATTGCAGAGAAAGAAGTAAGGATTAAGCT
TCTTAAAAAACCAGAAAAGGGAGAGGAACCAACCGCAGAGAAACCGAAAGAAAGAGGAGAGGAG
ATTGATACTGGAGGTGGCAGGCCCGTGGAAGGCTCGCTGGAGGAGTCCCAGGAGATGTCACGCA
GCGGCAGTGATAGAGAGTACAGGGATCTGGAGAGATCTCAAGAAAAAGAATGTGAAGCACAAAG
ACACCATGTGGATGACGGCAGGAGGCACAGAGCTCCCCACGAGCCTGACTGGCTTTCCAGAAGG
AGTGAGGATGAGCAGAGATGGGGGAAAGGACCTGGCCAAGACAGAGGGAAGAAGGGGAGCCAGG
ACAGCGGGGCTCCGGGGCAGGCCATGGAGAGACTGGGAAGAGCGCAGAGGTGTGACGACGGTCC
GGCACCCAGAAAGGAGCGACTGGCAAACAAGGACCGGCCGGCCTTGCAGCTGTATGATCCAGGA
GCTCGCTTCCGAGCACGAGAGTGTGGCGGAAGTGGGAGGATCTGCAAGGCAGAAGGTTCGGGGA
CTGGTCCTGAGAAGAGGGAAGAGGCAGAGTGAGTCACTGGGTGCACCTGGCCTCCATGGACAAG
CGAAGGAATCTCAGAAACGTGTAAAGGACCCCGAGTGTGACTGGAAAGGAGAACTTACTCCTTA
CCAGGAAACTGGAAGCTAAAAATACAGAGGGTGACATAGAAACACGCAGACACCATTCTAAAGA
AAGTAGTGATCTTGTGTTAAATTGAGCAGAATTCTCACGGATTTTACCATTCCTGTTATAAACT
AATATTTGTTTTTCAGCCAAAACAGAAAATGATTTTCACTGGACAGTAGAAAAATATGTGTAAA
ATAGGGAAGAAAGTTAGTATTGGATCAGTGTGAGTCCTGAAGCACTTTCAGTGCTGTGAGAACG
ACATCCAGTGTGGGTTTCATTCATTGACAGGCAGAGGAGCTGTCAGTCTCTCGTGCCTCTCGGT
GGCCTCTGAGCTGTGCTGTCGAATAGAGTAGTTCTTGTTTGTTACAGCCTCCGTGCGTCAGCCA
TGCCTGCAGAGTGTGCTGTGTTTTAGTCCTGGTAGGAATATATACCAGAGTTCCCAGTATTTAA
AACCCAACAGCTTCAACTATTGCCCTTTCAACAGTTTTGCCACTGACCGGATGAAAATGGTTCC
ACAGTCTTTGGATGGATGGATTTGTGGTTTGTAACCATTACGGTTTAAACCATGGTTTAAGAAT
TTGCCCAAATAACAGAAATTTTGTTTGGGAAGGGATAAACTAGGTATAGCATATAGAGCCTGTC
TTTGAGTTTTAGATACTTTATTTGTAAATAACTTAAAATAGCTTTCTGAAACCGTGCATTCTAC
AGTTTCTTGCTTTCAGTGAAATTGTTAAATGTCAATGTCTTTTTGGCACTGCGATTTTAACCAT
TTATTAAATACAAGTTTTGTTAAAGAA

hide sequence

RefSeq Acc Id:

XM_038007937 ⟹ XP_037863865

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666046	49,360,990 - 49,384,490 (+)	NCBI

RefSeq Acc Id:

XM_038007938 ⟹ XP_037863866

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666046	49,361,018 - 49,384,490 (+)	NCBI

RefSeq Acc Id:

XM_038007939 ⟹ XP_037863867

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666046	49,360,990 - 49,384,490 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_007959222	(Get FASTA)	NCBI Sequence Viewer
	XP_007959224	(Get FASTA)	NCBI Sequence Viewer
	XP_037863865	(Get FASTA)	NCBI Sequence Viewer
	XP_037863866	(Get FASTA)	NCBI Sequence Viewer
	XP_037863867	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013417.1

RefSeq Acc Id:	XP_007959222 ⟸ XM_007961031
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RXS8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007959224 ⟸ XM_007961033
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RXS8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000013417 ⟸ ENSCSAT00000015478

RefSeq Acc Id:	XP_037863865 ⟸ XM_038007937
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_037863867 ⟸ XM_038007939
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_037863866 ⟸ XM_038007938
- Peptide Label:	isoform X4

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017388	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015478.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	Upf3	UniProtKB/TrEMBL
	UPF3_dom	UniProtKB/TrEMBL
NCBI Gene	UPF3A	ENTREZGENE
PANTHER	PTHR13112	UniProtKB/TrEMBL
	PTHR13112:SF2	UniProtKB/TrEMBL
Pfam	Smg4_UPF3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A0D9RXS8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar