PSMG3 (proteasome assembly chaperone 3)

Gene: PSMG3 (proteasome assembly chaperone 3) Chlorocebus sabaeus

Analyze

Symbol:

PSMG3

Name:

proteasome assembly chaperone 3

RGD ID:

18578433

Description:

ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	20,027,990 - 20,030,781 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	20,028,092 - 20,030,922 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666090	1,684,676 - 1,688,411 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chaperone-mediated protein complex assembly (ISO)

proteasome assembly (IEA)

Cellular Component

protein-containing complex (ISO)

Molecular Function

molecular adaptor activity (ISO)

protein binding (ISO)

protein-containing complex binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PSMG3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	20,027,990 - 20,030,781 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	20,028,092 - 20,030,922 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666090	1,684,676 - 1,688,411 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

PSMG3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	1,567,332 - 1,570,032 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	1,567,332 - 1,571,005 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	1,606,968 - 1,609,668 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	1,573,494 - 1,576,155 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	1,574,122 - 1,576,822 (-)	NCBI		Celera
Cytogenetic Map	7	p22.3	NCBI
HuRef	7	1,527,317 - 1,530,016 (-)	NCBI		HuRef
CHM1_1	7	1,606,554 - 1,609,251 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	1,679,436 - 1,682,138 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	1,659,355 - 1,662,055 (-)	NCBI

Psmg3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	139,809,368 - 139,812,649 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	139,809,347 - 139,812,640 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	139,823,613 - 139,826,894 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	139,823,592 - 139,826,885 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	140,299,548 - 140,302,797 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	140,076,068 - 140,079,317 (-)	NCBI		MGSCv36	mm8
Celera	5	136,878,499 - 136,881,748 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	78.81	NCBI

Psmg3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	19,923,288 - 19,926,205 (+)	NCBI		GRCr8
mRatBN7.2	12	14,809,440 - 14,812,357 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	14,809,450 - 14,812,342 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	15,617,454 - 15,620,371 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	16,240,984 - 16,243,901 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	15,267,620 - 15,270,536 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	16,898,999 - 16,901,945 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	16,899,025 - 16,901,934 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	18,890,071 - 18,893,195 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	15,287,238 - 15,290,127 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	16,568,544 - 16,571,490 (+)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

Psmg3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	9,186,205 - 9,187,835 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	9,186,205 - 9,187,942 (-)	NCBI	ChiLan1.0	ChiLan1.0

PSMG3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	6,516,462 - 6,521,648 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	54,841,163 - 54,843,987 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	1,815,056 - 1,817,879 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	1,933,662 - 1,936,418 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	1,933,662 - 1,936,332 (-)	Ensembl	panpan1.1		panPan2

PSMG3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	15,402,839 - 15,404,366 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	15,403,167 - 15,404,359 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	16,870,660 - 16,872,834 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	15,528,910 - 15,531,100 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	15,529,271 - 15,530,469 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	15,331,729 - 15,333,283 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	15,258,495 - 15,260,045 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	15,545,473 - 15,547,663 (+)	NCBI		UU_Cfam_GSD_1.0

Psmg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	143,331,387 - 143,332,981 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936754	1,675,926 - 1,678,974 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936754	1,676,895 - 1,678,959 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PSMG3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	1,052,191 - 1,054,688 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	1,052,185 - 1,054,716 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	1,167,043 - 1,170,305 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Psmg3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	27,026,073 - 27,027,753 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	27,026,113 - 27,027,819 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36		43
Low		20	17
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008018868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008018869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000015674 ⟹ ENSCSAP00000013607

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	28	20,028,092 - 20,030,922 (+)	Ensembl

RefSeq Acc Id:

XM_008018869 ⟹ XP_008017060

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	28	20,027,990 - 20,030,781 (+)	NCBI
Vero_WHO_p1.0	NW_023666090	1,684,676 - 1,688,411 (-)	NCBI

Sequence:

show sequence

CCGCTGCCCTGACTTCCGGAAGGTGGACGGAACCTGCGAGCAGGGCGGGCCCGCGTGGCGCACG
CAGAGCCACTTCCGGGCGCGGCGCCGGCTTGCTGCCACTGCCCCGCCATGGAAGACACACCGTT
GGTGATATCAAAACAGAAGACGGAGGTGGTGTGCGGGGTCCCCACCCAGGTGGTGTGCACGGCC
TTCAGCAGTCACATCCTGGTGGTGGTGACCCAGTTCGGGAAGATGGGTACCTTGGTCTCCCTGG
AGCCCAGCAGCGTGGCCAGTGACGTCAGCAAGCCTGTGCTCACCACAAAAGTCCTTCTGGGGCA
GGATGAGCCTCTCATCCATGTCTTTGCAAAGAACCTGGTAGCATTTGTGTCTCAAGAAGCTGGA
AACAGAGCAGTCCTCCTCGCCGTGGCCGTGAAGGACAAAAGCATGGAGGGGCTGAAGGCGCTGA
GGGAGGTGATCCGGGTGTGCCAGGTGTGGTGACCTGGAGGCAGCTGCCCCGCGCTGCTCAGCAG
GACACATGAGGACCTAGACACCCACTCAGGGACTCAAGTCTCGCCTCCGTCCCCGGTGGAGGGA
GGAACTTTGTCTGGCACTAGCCCTTGGAGCCAGGAAAAAATATTCGTGTCTCAGGCAGACTCTT
AACTCTGGTTACTAAGATCTTCTGTGCATGACGGGGAGGGTGGAACGGGTGCCAGAGGAGTCAT
GAATGGATCTCACTGGGACCTGAAACGTGCTTGTGTTTAAGAATTGGAGGAATGAGTCAGCAGG
CGTGGCTCATGGCCCCCCGTGTACGGGATCAATTGTGGGAGGAAATTTCTTTTTTATTAAAAGC
GAATGTGTATCCCAAAATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008017060	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000013607.1

RefSeq Acc Id:	XP_008017060 ⟸ XM_008018869
- UniProtKB:	A0A0D9RYB8 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000013607 ⟸ ENSCSAT00000015674

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000017580	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000015674.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.230.90	UniProtKB/TrEMBL
InterPro	Proteasome_assmbl_chp_3	UniProtKB/TrEMBL
KEGG Report	csab:103246877	UniProtKB/TrEMBL
NCBI Gene	PSMG3	ENTREZGENE
PANTHER	PROTEASOME ASSEMBLY CHAPERONE 3	UniProtKB/TrEMBL
	PTHR31051	UniProtKB/TrEMBL
Pfam	PAC3	UniProtKB/TrEMBL
UniProt	A0A0D9RYB8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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