TMEM123 (transmembrane protein 123)

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Gene: TMEM123 (transmembrane protein 123) Chlorocebus sabaeus

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Symbol:

TMEM123

Name:

transmembrane protein 123

RGD ID:

18573727

Description:

ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); ataxia telangiectasia (ortholog); COVID-19 (ortholog); FOUND IN cytoplasmic vesicle (inferred); external side of plasma membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

porimin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	93,767,359 - 93,822,539 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	93,765,365 - 93,822,806 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	32,041,026 - 32,096,611 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

asphyxiating thoracic dystrophy (ISO)

ataxia telangiectasia (ISO)

COVID-19 (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasmic vesicle (IEA)

external side of plasma membrane (IEA)

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TMEM123
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	93,767,359 - 93,822,539 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	93,765,365 - 93,822,806 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	32,041,026 - 32,096,611 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

TMEM123
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	102,396,332 - 102,452,765 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	102,396,332 - 102,470,384 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	102,267,063 - 102,323,496 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	101,772,266 - 101,828,985 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	99,428,614 - 99,485,334 (-)	NCBI		Celera
Cytogenetic Map	11	q22.2	NCBI
HuRef	11	98,193,581 - 98,250,555 (-)	NCBI		HuRef
CHM1_1	11	102,150,071 - 102,206,782 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	102,398,458 - 102,454,892 (-)	NCBI		T2T-CHM13v2.0

Tmem123
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	7,764,078 - 7,794,334 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	7,764,042 - 7,794,334 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	7,764,077 - 7,794,333 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	7,764,041 - 7,794,333 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	7,764,077 - 7,794,333 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	7,764,649 - 7,794,854 (+)	NCBI		MGSCv36	mm8
Celera	9	5,156,034 - 5,186,291 (+)	NCBI		Celera
Cytogenetic Map	9	A1	NCBI
cM Map	9	2.46	NCBI

Tmem123
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	13,206,907 - 13,237,069 (+)	NCBI		GRCr8
mRatBN7.2	8	4,922,077 - 4,952,228 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	4,922,098 - 4,952,224 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	8,883,450 - 8,913,390 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	7,181,230 - 7,211,169 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	5,181,742 - 5,211,908 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	5,967,373 - 5,997,387 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	5,967,463 - 5,997,383 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	5,969,112 - 5,999,126 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	4,604,130 - 4,632,932 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	4,604,129 - 4,632,932 (+)	NCBI
Celera	8	6,478,699 - 6,512,657 (+)	NCBI		Celera
Cytogenetic Map	8	q11	NCBI

Tmem123
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955412	5,690,988 - 5,741,109 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM123
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	103,195,323 - 103,251,788 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	104,283,691 - 104,340,392 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	97,342,669 - 97,399,342 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	100,835,988 - 100,892,618 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	100,835,988 - 100,892,618 (-)	Ensembl	panpan1.1		panPan2

TMEM123
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	29,223,682 - 29,284,076 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	29,174,439 - 29,233,164 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	29,277,988 - 29,336,816 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	29,277,955 - 29,336,818 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	29,312,550 - 29,370,582 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	29,192,177 - 29,251,032 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	29,367,494 - 29,425,743 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem123
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	86,040,980 - 86,102,981 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936551	5,447,563 - 5,495,530 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936551	5,433,528 - 5,495,529 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM123
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	33,084,822 - 33,160,311 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	33,084,820 - 33,160,346 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	37,033,047 - 37,080,716 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008020666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008020667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000001249 ⟹ ENSCSAP00000014825

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	1	93,765,365 - 93,822,806 (-)	Ensembl

RefSeq Acc Id:

XM_008020667 ⟹ XP_008018858

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	1	93,767,360 - 93,822,539 (-)	NCBI
Vero_WHO_p1.0	NW_023666043	32,041,026 - 32,096,611 (+)	NCBI

Sequence:

show sequence

AAAACTGCCATTTCCGAAGAGAAAGGAAACGGCTCGCGGCTTCTGGAGTTCCCAGGCGCGGGCC
TGCGAGGGAGGCCGGGAGCCGAGTCGCCACGCCCAGAACCCCGAGCCCGCCCCCGCGCCAGCCA
GACCGGCCCTGCACGCGACGCCCCCTCCAGGTCCCGCTCCTGCGCCCTATTTGGTCATTCGGGG
GGCAAGTGGCGGGAGGGGGAGACGTGAGCGGCCGAAGGGGAAGCGGAGCCGGCGCCGGCTGCAC
AGAGGAGCCGCTCTTGCCGCCGCCACCTCGGCTGGGAACCCACGAGGCCGCCGCATCCTGCCCT
CGGAACAATGGGGCTCGGCGCGCGAGGTGCCTGGGCCGCGCTGCTCCTGGGAACGCTGCAGGTG
CTAGCGCTGCTGGGGGCCGCCCATGAAAGCGCACCCATGGCGGCATCTGCAAACATAGAGAATT
CTGGGCCTCCACCCAACTCCAGTGCTAACTCAACAGAGACTCAACATGTGCCTTCCAACCATAC
AAATGAAACTTCCAACAGTACTGTGAAACCACCAACTTCAGTTGCCTCAGTCTCCAGCACTATG
ACAGTCACCACCATGAAACCCACAGCAGCATCTAATACAACAATACCAGCAATGGTCTCAACAA
ATATGACTTCTACCACCTTAAAGTCTACACCCAAAACAACAAGTGCTTCACAGAACACATCTCA
GATATCAACATCCACAATGACCGTAACCCACAATAGTTCAGTGACATCTGCTGCTTCATCAGTA
ACAATCACAACAACTATGCATTCTGAAGCAAAGAAAGGATCAAAATTTGATACTGGGAGCTTTG
TTGGTGGTATTGTATTAACGCTGGGAGTTTTATCTATTCTTTACATTGGATGCAAAATGTATTA
CTCAAGAAGAGGCATTCGGTATAGAACCATAGATGAACATGATGCCATCATTTAAGGAAATCCA
TGGACCAAGGAAGGAAGACAGATTGATGCCGCCCTATCAATTAATTTTGGTTTATTAATAGTTT
AAAACAATATTCTTTTTTTGAAAATAGTGTAAACAGGCCATGCATATAATGTACAGTGTATTAC
ATAAATATGTAAAGATTCCTCAAGGTAACGGGTTTGGGTTTTGTAATAAACATCTGGAGCTTAC
AGACAGTGAATACAAAGGTTTATATTCACTTTTAGCAAGCTCATAGTAAGACAAACAAGTCCTA
TCTCTTTTTTTTGTTTGTTTTAATGGCCGGGGGTGGGGGGGCATTGGTCACATATAACCAGTAA
TTGAAAGGTGTCATCACTGAAAGTGCCATCTGGGCATACAAATAAGGAGTTTGTCACAGCACTT
AGGATTTTGGGTATCTTGGAGCTCACACAAAGAACTTCAGTGCTTTTCAGAGCTGGATATATCC
TGATTACTGATGCCACACAGAAATTATACAATCAAGTAAACCAGATCTGAAGCATAATTTAAGA
AAAACATCAACCTTTTTTGTGCTTTAAACTGTAGTAGTTGGTCTAGAAACAAAATACTCCAAGA
AGAAGAAAATTTTCAAATAAAACCCAAAATAATATCTGTGTTTAACCCTGTTAGGGATCCATTG
GAGCATTAAAGAGCGTATATTTTTATTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008018858	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000014825.1

RefSeq Acc Id:

XP_008018858 ⟸ XM_008020667

Ensembl Acc Id:

ENSCSAP00000014825 ⟸ ENSCSAT00000001249

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000003220	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000001249.1	UniProtKB/TrEMBL
InterPro	CD164_MGC24	UniProtKB/TrEMBL
NCBI Gene	TMEM123	ENTREZGENE
PANTHER	PORIMIN	UniProtKB/TrEMBL
	PTHR11337	UniProtKB/TrEMBL
Pfam	MGC-24	UniProtKB/TrEMBL
UniProt	A0A0D9S1T6_CHLSB	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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