RPL18A (ribosomal protein L18a) - Rat Genome Database

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Gene: RPL18A (ribosomal protein L18a) Chlorocebus sabaeus
Analyze
Symbol: RPL18A
Name: ribosomal protein L18a
RGD ID: 18573694
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN cytoplasmic translation (ortholog); response to antineoplastic agent (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH alcohol use disorder (ortholog); genetic disease (ortholog); Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L18a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,335,899 - 16,339,446 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,335,857 - 16,339,620 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,047,961 - 3,051,518 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPL18A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,335,899 - 16,339,446 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl616,335,857 - 16,339,620 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,047,961 - 3,051,518 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
RPL18A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,859,910 - 17,863,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,859,910 - 17,864,153 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,970,719 - 17,974,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,831,727 - 17,835,124 (+)NCBINCBI36Build 36hg18NCBI36
Build 341917,831,730 - 17,835,124NCBI
Celera1917,872,445 - 17,875,838 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1917,536,059 - 17,539,505 (+)NCBIHuRef
CHM1_11917,970,422 - 17,973,868 (+)NCBICHM1_1
T2T-CHM13v2.01917,993,996 - 17,997,405 (+)NCBIT2T-CHM13v2.0
Rpl18a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,347,366 - 71,350,087 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,347,366 - 71,350,056 (-)EnsemblGRCm39 Ensembl
GRCm38870,894,722 - 70,897,443 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,894,722 - 70,897,412 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,418,621 - 73,421,342 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36873,824,368 - 73,826,387 (-)NCBIMGSCv36mm8
Celera873,456,025 - 73,458,747 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.38NCBI
Rpl18a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,576,467 - 18,578,653 (+)NCBIGRCr8
mRatBN7.21618,542,555 - 18,544,578 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,542,566 - 18,545,546 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,584,772 - 18,586,795 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,717,450 - 19,719,473 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,637,713 - 18,639,736 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01620,293,277 - 20,295,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,293,229 - 20,295,294 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,150,821 - 20,152,827 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,042,063 - 19,044,069 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11619,042,060 - 19,044,067 (+)NCBI
Celera1618,735,212 - 18,737,218 (+)NCBICelera
Cytogenetic Map16p14NCBI
Rpl18a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,384,209 - 3,387,743 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,385,056 - 3,387,743 (-)NCBIChiLan1.0ChiLan1.0
RPL18A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,724,702 - 22,728,191 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,731,503 - 21,734,993 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01917,341,788 - 17,345,278 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11918,315,535 - 18,318,978 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,315,535 - 18,318,978 (+)Ensemblpanpan1.1panPan2
RPL18A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,036,543 - 45,040,009 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,036,510 - 45,039,935 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,948,492 - 44,952,001 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,521,261 - 45,524,770 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,519,522 - 45,524,668 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12044,758,115 - 44,761,624 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,168,389 - 45,171,898 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,444,343 - 45,447,861 (-)NCBIUU_Cfam_GSD_1.0
Rpl18a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,643,098 - 203,648,946 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,194,254 - 3,198,155 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,194,952 - 3,198,020 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL18A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,890,796 - 59,897,024 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,892,788 - 59,906,242 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,462,228 - 59,465,636 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Rpl18a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249081,395,810 - 1,400,043 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249081,395,752 - 1,398,595 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 20 60
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000003500   ⟹   ENSCSAP00000001778
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl616,335,857 - 16,339,620 (+)Ensembl
RefSeq Acc Id: XM_007995753   ⟹   XP_007993944
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1616,335,899 - 16,339,446 (+)NCBI
Vero_WHO_p1.0NW_0236660743,047,961 - 3,051,518 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007993944 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000001778
  ENSCSAP00000001778.1
  ENSCSAP00000019126.1
Reference Protein Sequences
RefSeq Acc Id: XP_007993944   ⟸   XM_007995753
- UniProtKB: A0A0D9QZI9 (UniProtKB/TrEMBL),   A0A0D9SE37 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000001778   ⟸   ENSCSAT00000003500


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005467 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCSAG00000019630 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000003500.1 UniProtKB/TrEMBL
  ENSCSAT00000019720.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.20.10 UniProtKB/TrEMBL
InterPro 50S_L18Ae/Ribosomal_L18a/L20 UniProtKB/TrEMBL
  Ribosomal_L18a//L18Ae/LX UniProtKB/TrEMBL
  Ribosomal_L18a/L20_eukaryotes UniProtKB/TrEMBL
NCBI Gene RPL18A ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L18A UniProtKB/TrEMBL
  PTHR10052 UniProtKB/TrEMBL
Pfam Ribosomal_L18A UniProtKB/TrEMBL
PIRSF Ribosomal_L18a UniProtKB/TrEMBL
Superfamily-SCOP RplX-like UniProtKB/TrEMBL
UniProt A0A0D9QZI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A0D9SE37 ENTREZGENE, UniProtKB/TrEMBL