SLC43A1 (solute carrier family 43 member 1) - Rat Genome Database

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Gene: SLC43A1 (solute carrier family 43 member 1) Chlorocebus sabaeus
Analyze
Symbol: SLC43A1
Name: solute carrier family 43 member 1
RGD ID: 18573034
Description: ENCODES a protein that exhibits L-amino acid transmembrane transporter activity (ortholog); L-isoleucine transmembrane transporter activity (ortholog); L-leucine transmembrane transporter activity (ortholog); INVOLVED IN isoleucine transport (ortholog); L-amino acid transport (ortholog); L-leucine transport (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog); podocyte foot (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: large neutral amino acids transporter small subunit 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,716,708 - 15,750,453 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038113,067,680 - 113,099,596 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC43A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1115,716,708 - 15,750,453 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038113,067,680 - 113,099,596 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
SLC43A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381157,484,534 - 57,515,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1157,484,534 - 57,515,780 (-)EnsemblGRCh38hg38GRCh38
GRCh371157,252,007 - 57,283,175 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361157,008,583 - 57,039,735 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,008,583 - 57,039,735NCBI
Celera1154,608,562 - 54,639,686 (-)NCBICelera
Cytogenetic Map11q12.1ENTREZGENE
HuRef1153,600,856 - 53,631,981 (-)NCBIHuRef
CHM1_11157,118,296 - 57,149,440 (-)NCBICHM1_1
T2T-CHM13v2.01157,434,741 - 57,465,880 (-)NCBIT2T-CHM13v2.0
Slc43a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39284,669,196 - 84,693,930 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl284,669,194 - 84,693,938 (+)EnsemblGRCm39 Ensembl
GRCm38284,838,855 - 84,863,586 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl284,838,850 - 84,863,594 (+)EnsemblGRCm38mm10GRCm38
MGSCv37284,679,565 - 84,703,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36284,639,689 - 84,664,433 (+)NCBIMGSCv36mm8
Celera286,437,558 - 86,461,734 (+)NCBICelera
Cytogenetic Map2DNCBI
cM Map249.45NCBI
Slc43a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8390,327,250 - 90,353,438 (+)NCBIGRCr8
mRatBN7.2369,920,586 - 69,946,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl369,920,649 - 69,946,768 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx373,302,227 - 73,328,235 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0381,900,896 - 81,926,906 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0379,659,861 - 79,685,343 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0372,238,796 - 72,265,023 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl372,238,981 - 72,264,466 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0378,760,039 - 78,784,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4368,049,296 - 68,090,034 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1367,946,913 - 67,986,407 (+)NCBI
Celera369,275,546 - 69,301,624 (+)NCBICelera
Cytogenetic Map3q24NCBI
Slc43a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555112,472,716 - 2,490,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555112,474,173 - 2,490,508 (-)NCBIChiLan1.0ChiLan1.0
SLC43A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2958,641,028 - 58,672,202 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11159,657,821 - 59,689,855 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,725,502 - 52,757,273 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,197,977 - 56,228,610 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,197,977 - 56,228,565 (-)Ensemblpanpan1.1panPan2
SLC43A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11838,652,961 - 38,675,007 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1838,653,036 - 38,674,513 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1838,199,173 - 38,221,101 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01839,335,064 - 39,357,027 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1839,335,059 - 39,356,531 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11838,917,618 - 38,939,566 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01838,491,380 - 38,513,311 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01839,121,714 - 39,143,656 (+)NCBIUU_Cfam_GSD_1.0
Slc43a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494714,870,835 - 14,896,450 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365814,984,668 - 5,009,332 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365814,986,034 - 5,009,892 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC43A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl213,406,948 - 13,436,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1213,407,046 - 13,436,270 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Slc43a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248643,137,713 - 3,160,656 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248643,137,663 - 3,174,793 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_037999301   ⟹   XP_037855229
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038113,067,680 - 113,099,596 (+)NCBI
RefSeq Acc Id: XM_037999302   ⟹   XP_037855230
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038113,067,680 - 113,099,226 (+)NCBI
RefSeq Acc Id: XM_037999303   ⟹   XP_037855231
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038113,067,680 - 113,097,242 (+)NCBI
RefSeq Acc Id: XM_037999304   ⟹   XP_037855232
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038113,067,680 - 113,099,226 (+)NCBI
RefSeq Acc Id: XM_037999305   ⟹   XP_037855233
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038113,067,680 - 113,099,593 (+)NCBI
RefSeq Acc Id: XM_037999306   ⟹   XP_037855234
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038113,067,680 - 113,099,226 (+)NCBI
RefSeq Acc Id: XM_037999307   ⟹   XP_037855235
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666038113,069,411 - 113,099,226 (+)NCBI
RefSeq Acc Id: XP_037855229   ⟸   XM_037999301
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037855233   ⟸   XM_037999305
- Peptide Label: isoform X5
RefSeq Acc Id: XP_037855230   ⟸   XM_037999302
- Peptide Label: isoform X2
RefSeq Acc Id: XP_037855232   ⟸   XM_037999304
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037855234   ⟸   XM_037999306
- Peptide Label: isoform X6
RefSeq Acc Id: XP_037855231   ⟸   XM_037999303
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037855235   ⟸   XM_037999307
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
NCBI Gene SLC43A1 ENTREZGENE